Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq422 91.5 2e-13 seq218 89.7 6e-13 seq1138 87.8 2e-12 seq6009 86.0 7e-12 seq1489 86.0 7e-12 seq905 86.0 7e-12 seq630 86.0 7e-12 seq525 86.0 7e-12 seq410 86.0 7e-12 >seq422 Length=101449 Score = 91.5 bits (100), Expect = 2e-13 Identities = 294/445 (66%), Gaps = 16/445 (4%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 ||||| ||||| |||| ||| || || || | ||| |||||||| | || || ||| Sbjct 43786 CCTTCGTCTCTTGAGATCAGTTCGTTGGAGAAAGTAAGTCCAGGCATTAAACCTCGTTTC 43845 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 |||||||| || || | ||| ||| ||| ||||||||| ||||| || || ||||| Sbjct 43846 TTCAACCAGAAAATAGAACAAAAGCTACCGGAGAAGAAGATACCTTCAACGCAAGCAAAA 43905 Query 74889 GCGACAAGGCGTTGCGCGAA-CGGTG-CATCGGAAGTCATCCAAGTCTGAGCCCATTCAG 74946 || || | |||| ||||| | || ||| | | ||||| || ||||||| | Sbjct 43906 GCCACGATTCGTTCAGCGAAGCTTTGAGATCCGTCG--ATCCATTTCATCGCCCATTGTG 43963 Query 74947 CTT--TTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTC 75004 ||| |||||| || ||| | || || || || ||||||| | |||||| Sbjct 43964 CTTTCTTCGTT--ACACAAGGAATGGTTTCAATTGCGCGGAAGAGATGATCTCTCTCTTT 44021 Query 75005 GGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTT 75064 | ||| |||| | || | | || ||| |||| || ||||| ||| | Sbjct 44022 GTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTCAGAGTGAATATTCTCAAT 44081 Query 75065 GAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGA-AAAA 75122 ||| || | |||| || | || ||||| | ||||| ||||| || | | Sbjct 44082 -CGCGATTTGAAATCCGTAAAAGGCACGAGCCTCGGAGATCTGAACATC---GGACATGA 44137 Query 75123 TTCATGTCGAT--ATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCA 75180 || || ||| |||||| | ||||||||||| || |||||||| || || ||||| Sbjct 44138 ATCGGGTTGATAGATTCTCTAAAACGATGCCGTCTGATGCGGCGAAGAAGGCGAGTACGT 44197 Query 75181 TTTTGATAAAGTGGCGCTCATCGTC 75205 |||||| ||||| || || ||||| Sbjct 44198 GTTTGATGAAGTGTCGTTCGTCGTC 44222 >seq218 Length=172358 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 95565 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 95624 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 95625 TGAGCTATGAAAGCAA 95640 >seq1138 Length=50925 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 79621 AGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-AC 79679 ||| |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| || Sbjct 37192 AGATTGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAAC 37133 Query 79680 CAATTGAGCTACGAAAGC 79697 ||| |||||||||| ||| Sbjct 37132 CAACTGAGCTACGAGAGC 37115 >seq6009 Length=5684 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 621 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 562 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 561 TGAGCTATGAAAGC 548 >seq1489 Length=14504 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 4281 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4222 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 4221 TGAGCTACGAGAGC 4208 >seq905 Length=89025 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 82746 TGCTTTCATTGAGGGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 82687 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 82686 TGAGCTATGAAAGC 82673 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 82914 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 82855 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 82854 TGAGCTATGAAAGC 82841 >seq630 Length=57396 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 19345 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 19286 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 19285 TGAGCTACGAGAGC 19272 >seq525 Length=121843 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 49978 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 50037 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 50038 TGAGCTACGAGAGC 50051 >seq410 Length=144570 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 56117 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 56058 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 56057 TGAGCTATGAAAGC 56044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547162578038000