Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq275 102 6e-17 seq3586 95.1 9e-15 >seq275 Length=143682 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || ||||| ||||| || ||||| || || |||| ||||| ||| | Sbjct 123446 ATGCAAATATTCGTGAAGACTCTCACCGGGAAGACAATCACCCTTGAAGTCGAGAGCTCT 123505 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | |||| |||||| || || || || |||||| |||| ||| | Sbjct 123506 GACACTATTGACAAC--GTCAAAGCCAAGATCCAGGATAAGGAAGGTATTCCTCCGGACC 123563 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || || ||||| || | || || | |||| |||| ||||||||| Sbjct 123564 AGCAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACCTTGGCCGATTACA 123623 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||| ||| || | |||||||| |||||| | ||||| || Sbjct 123624 ACATTCAAAAGGAGTCAACCCTTCATTTGGTGTTGCGTCTTCGTGGAGG 123672 >seq3586 Length=17470 Score = 95.1 bits (104), Expect = 9e-15 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||| |||| |||||||| || ||||| || || || | |||||||| ||| | Sbjct 5309 ATGCAAGTTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGATGTCGAGAGCTCT 5368 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| || || ||| || || || ||||| |||| ||| | Sbjct 5369 GATACCATCGACAAT--GTTAAGGCAAAGATTCAGGATAAGGAAGGCATTCCTCCGGATC 5426 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| || || ||||||||||| | || || | || | |||| ||||||||| Sbjct 5427 AGCAAAGGTTGATCTTCGCCGGAAAACAGCTAGAAGATGGCCGTACCTTGGCCGATTACA 5486 Query 27968 ACATCCAAAAAGA 27980 ||||||| ||||| Sbjct 5487 ACATCCAGAAAGA 5499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355828527459870