Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq863 89.7 4e-13 seq308 89.7 4e-13 seq1 87.8 2e-12 >seq863 Length=117140 Score = 89.7 bits (98), Expect = 4e-13 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| ||||| || || || || || || ||||| || || || |||| || Sbjct 77652 CACCAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCGAGAGTACGGCCGTCTTC 77711 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCA 39193 |||||||| || || || || | |||||||||| ||||||| | | ||| ||||| Sbjct 77712 GAGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGG-ATTCCCTCCTTGTCTT 77770 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| ||| ||||| | | | || || ||||| || || | ||||| | | Sbjct 77771 GGATCTTCGCTTTGACATTGTCGATGGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCT 77830 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACG 39291 | ||||| || ||||| || ||||| ||||||||| || Sbjct 77831 TACCCGTTAGGGTTTTCACGAAGATCTGCATCTTTGCG 77868 >seq308 Length=205501 Score = 89.7 bits (98), Expect = 4e-13 Identities = 166/237 (70%), Gaps = 10/237 (4%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| ||||||| || | ||||| || || || ||| || || || || ||||| Sbjct 130705 CATGCCACCTCTTAGACGAAGGACCAAGTGCAGGGTTGACTCCTTCTGGATGTTGTAATC 130764 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGG 39172 ||||| ||||| | || ||||||||||| || || || || || | ||| |||| ||| Sbjct 130765 AGCAAGAGTTCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGG 130824 Query 39173 TGGGCACGCTCTCTTTGTCCATGATTTTCTGT-TTGAGCGTCGCCACCGTATC---GCTC 39228 ||| | || || ||||| |||||| ||| || | | | || || || ||| Sbjct 130825 AGGGATCCCT-TCCTTGTCTTGGATTTT-TGTCTTCACATTGTCGACTGTGTCCGAGCT- 130881 Query 39229 GACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||||| |||| || || ||||||| || || || |||||||| || |||||| Sbjct 130882 --CTCCACTTCCAAAGTTATGGTTTTTCCGGTAAGGGTCTTAACAAAAATCTGCATC 130936 >seq1 Length=111110 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/120 (77%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | || | ||||||||| ||||| |||||| || || || |||||||| Sbjct 60647 CCTCCTCTCAGACGGAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAATCGGCG 60588 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGG 39176 ||||| | | |||| || || || || || || || || ||||||||||| | ||||||| Sbjct 60587 AGTGTCCTTCCGTCTTCCAGTTGCTTCCCGGCGAAGATCAGACGCTGCTGATCCGGTGGG 60528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429504713970530