Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1 134 9e-27 seq308 120 2e-22 seq683 111 1e-19 seq3586 102 6e-17 seq2666 100 2e-16 seq516 98.7 7e-16 seq275 98.7 7e-16 seq1061 82.4 5e-11 >seq1 Length=111110 Score = 134 bits (148), Expect = 9e-27 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| |||||||| ||||| || ||||| || || || ||||| || Sbjct 60418 AAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAATCA 60477 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 ||||||| | || ||| | || | || | | ||||| ||||| | || || || Sbjct 60478 TCGGACACAATCGACAATGTGAAGGCGAAGA-TCCAAGACAAGGAAGGAATCCCACCGGA 60536 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || || ||||| || ||||||||||||| | | || | | |||||| Sbjct 60537 TCAGCAGCGTCTGATCTTCGCCGGGAAGCAACTGGAAGACGGAAGGACACTCGCCGATTA 60596 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||| || |||||||| || | ||||| || | | || ||||||| Sbjct 60597 CAACATCCAGAAAGAGTCGACGCTTCATTTGGTGCTCCGTCTGAGAGGAGG 60647 >seq308 Length=205501 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||||||||| || ||||| || || || |||||||| | | Sbjct 131391 ATGCAAATATTTGTGAAAACCCTCACTGGCAAAACCATTACCCTAGAAGTTGAGAGCTCT 131332 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| ||||| ||| ||||| | || | || ||||| ||||| | || || || || Sbjct 131331 GACACCGTTGACAATGTTAAAGCTAAGA-TTCAAGACAAGGAAGGAATCCCTCCGGACCA 131273 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || ||||| || ||||| || || || | |||||| | | ||||||||| Sbjct 131272 ACAGAGACTCATCTTTGCTGGTAAACAGCTTGAGGATGGTCGCACTCTTGCCGATTACAA 131213 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || ||||| || || | ||||| || | | || ||||||| Sbjct 131212 CATCCAGAAAGAATCAACCCTTCATTTGGTGCTTCGTCTGAGAGGAGG 131165 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| || |||||||| || ||| | || ||||| | | Sbjct 130707 ATGCAGATTTTTGTCAAGACCCTAACCGGAAAAACCATAACTTTGGAGGTTGAGAGCTCA 130648 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||||| || ||| | || |||| | || ||||||||||| | || ||||| || Sbjct 130647 GACACTGTAGATAATGTGAAGGCAAAGA-TTCAAGACAAAGAAGGGATCCCACCAGACCA 130589 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || ||||| || || || || || || | || ||| | | || ||||| Sbjct 130588 ACAGAGACTCATCTTTGCTGGTAAGCAGCTTGAGGATGGTCGTACTCTTGCAGACTACAA 130529 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||||||||| || Sbjct 130528 CATCCAAAAAGAGTCGAC 130511 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||| ||||| || |||||||| || ||| | ||||| || | || Sbjct 130935 ATGCAGATTTTTGTTAAGACCCTTACCGGAAAAACCATAACTTTGGAAGTGGAGAGCTCG 130876 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| || || ||| | || ||||||| | ||||| ||||| | || || || || Sbjct 130875 GACACAGTCGACAATGTGAAGACAAAAA-TCCAAGACAAGGAAGGGATCCCTCCGGACCA 130817 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || || || || ||||| || || || | || ||| | | |||||||| Sbjct 130816 ACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGAACTCTTGCTGATTACAA 130757 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 130756 CATCCAGAAGGAGTCAAC 130739 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || ||||| || ||| | || ||||| | | Sbjct 131163 ATGCAGATATTCGTCAAGACCCTTACCGGTAAAACCATAACTTTGGAGGTTGAAAGCTCA 131104 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || ||||| | |||| || || ||||| ||||| | | ||||| ||| Sbjct 131103 GATACCGTTGACAATGTAAAGGCCAAGATCCAAGACAAGGAAGGGATCTCACCAGACCAA 131044 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | ||||| |||||||| || || ||||| | ||||| | | ||||||||| Sbjct 131043 CAGAGACTCATATTCGCCGGCAAGCAGCTCGAAGATGGTCGCACACTTGCTGATTACAAC 130984 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 130983 ATTCAGAAGGAGTCAAC 130967 >seq683 Length=32930 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 |||||||| || |||| |||||||||||| | || |||||||| || |||||| | ||| Sbjct 24508 GACAAAGAGGGGATACCACCAGATCAACAGAGGTTGATATTTGCTGGTAAACAATTAGAA 24567 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | || ||||||| ||||||||||| || |||||||| ||| | || || ||||| Sbjct 24568 GATGGTCGAACTTTAGCTGATTACAACATTCAGAAAGAGTCTACAATTCACTTGGTTTTG 24627 Query 23824 AGGTTGCGAGGAGG 23837 ||| | |||| || Sbjct 24628 AGGCTTAGAGGTGG 24641 >seq3586 Length=17470 Score = 102 bits (112), Expect = 6e-17 Identities = 159/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 23597 ATTAATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCG 23656 || |||| || | ||||| ||||||| ||||| ||||| || || || |||||||||| Sbjct 5295 ATGAATTTGTTCAGATGCAAGTTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCG 5354 Query 23657 AAGTTGACTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGT 23715 | || || | | || || | || ||| |||| |||| | || || || ||||| Sbjct 5355 ATGTCGAGAGCTCTGATACCATCGACAATGTTAAGGCAAAGA-TTCAGGATAAGGAAGGC 5413 Query 23716 GTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACT 23775 | || || ||||| || | || || || ||||| ||||| || ||||| | || || Sbjct 5414 ATTCCTCCGGATCAGCAAAGGTTGATCTTCGCCGGAAAACAGCTAGAAGATGGCCGTACC 5473 Query 23776 TTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 || | |||||||||||| || ||||| || || | || || ||| Sbjct 5474 TTGGCCGATTACAACATCCAGAAAGAATCAACCCTCCACTTGGTT 5518 >seq2666 Length=20083 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || |||||||| || || ||||| || || || |||||||| | | Sbjct 9508 ATGCAGATTTTTGTGAAAACCCTAACTGGCAAAACCATAACCCTAGAAGTTGAGAGCTCT 9449 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| ||||| ||| | || | || | | | ||||||||||| | | |||| || Sbjct 9448 GACACCGTTGACAATGTCAAGGCCAAGATTCAC-GACAAAGAAGGGATCCAAGCAGACCA 9390 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || || || ||||| ||||| ||||| | | |||| | | || || || Sbjct 9389 ACAGAGACTTATCTTCGCTGGCAAGCAACTTGAAGATGGTCACACTCTTGCAGACTATAA 9330 Query 23790 CATACAAAAAGAGTCCACA 23808 ||| ||||| || || ||| Sbjct 9329 CATCCAAAAGGAATCAACA 9311 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || || || || || || || |||| |||||||| | | Sbjct 9736 ATGCAAATCTTCGTGAAGACTCTTACAGGCAAGACCATAGCTCTTGAAGTTGAAAGCTCC 9677 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||||||||| || || || | ||| || || |||| ||| || || || || || Sbjct 9676 GACACTGTTGATAACATCAAGA-TAAAGATCCAAGATAAAGCAGGAGTCCCTCCGGACCA 9618 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || || ||||| ||||| || || | || ||| | | |||||||| Sbjct 9617 ACAAAGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGTCGTACTCTTGCGGATTACAA 9558 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||||| |||| ||| ||| | ||| | || || Sbjct 9557 TATACAGAAAGGGTCAACACTTCATCTTGTGTT 9525 >seq516 Length=37039 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | ||||| || || |||| ||| || || || | Sbjct 9988 ATGCAGATTTTTGTCAAGACTTTGACGGGCAAGACCATCATTCTTGAGGTCGAGAGTTCT 9929 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || ||||| ||| | || |||| | || |||||||||||| | | || || || Sbjct 9928 GATACGGTTGACAATGTCAAGGCAAAGA-TTCATGACAAAGAAGGGATCCAACCGGACCA 9870 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || || || ||||| | |||| ||||| |||||||| Sbjct 9869 GCAGAGGCTTATCTTTGCGGGGAAGCAGCTAGAAGATGGTCGCATTTTAGCGGATTACAA 9810 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| ||||||||||| || | ||| | ||| Sbjct 9809 CATCCAAAAAGAGTCGACTCTTCATCTTGTT 9779 Score = 95.1 bits (104), Expect = 8e-15 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || ||||| || ||| | || ||||| | | Sbjct 10444 ATGCAGATATTCGTCAAGACCCTTACCGGTAAAACCATAACTTTGGAGGTTGAAAGCTCA 10385 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || | | ||||| ||||| | || ||||| || Sbjct 10384 GATACCATTGACAATGTGAAGGCCAAGA-TCCAAGACAAGGAAGGGATCCCACCAGACCA 10326 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | ||||| |||||||| || || ||||| | |||||| | | |||||||| Sbjct 10325 ACAAAGACTCATATTCGCCGGCAAGCAGCTCGAAGATGGTCGCACTCTTGCTGATTACAA 10266 Query 23790 CATACAAAAAGAGTCCACA 23808 ||| || || ||||| ||| Sbjct 10265 CATTCAGAAGGAGTCAACA 10247 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || |||||||| || || ||||| || ||| | || ||||| | | Sbjct 10216 ATGCAGATTTTTGTGAAAACCCTAACTGGCAAAACCATAACTTTGGAGGTTGAGAGCTCA 10157 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | |||| ||| ||| ||||||||||| | || ||||| ||| Sbjct 10156 GACACAATAGATAATGTAAAGGCAAAGATTCAAGACAAAGAAGGGATCCCACCAGACCAA 10097 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || ||||| || || || || || || | || ||| | | || |||||| Sbjct 10096 CAAAGACTCATCTTTGCTGGTAAGCAGCTTGAGGATGGTCGTACTCTTGCAGACTACAAC 10037 Query 23791 ATACAAAAAGAGTCCACA 23808 || ||||| || || ||| Sbjct 10036 ATCCAAAAGGAATCAACA 10019 >seq275 Length=143682 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || ||||| || || || ||||| || ||||| || | | Sbjct 123446 ATGCAAATATTCGTGAAGACTCTCACCGGGAAGACAATCACCCTTGAAGTCGAGAGCTCT 123505 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | ||| || || || || |||||| | || || || || Sbjct 123506 GACACTATTGACAACGTCAAAGCCAAGATCCAGGATAAGGAAGGTATTCCTCCGGACCAG 123565 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || || || || || | ||||| || | |||||||||| Sbjct 123566 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACCTTGGCCGATTACAAC 123625 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || ||||| ||||| || | ||||| || || Sbjct 123626 ATTCAAAAGGAGTCAACCCTTCATTTGGTGTT 123657 >seq1061 Length=128926 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 |||||||| ||| |||| || |||||||| | | |||||||| || || ||||| || Sbjct 83112 GACAAAGAGGGTATACCACCTGATCAACAAAGGCTGATATTTGCTGGTAAGCAACTTGAG 83053 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | || ||| ||| ||||||||||| || |||||||| || | ||| | || | Sbjct 83052 GATGGCCGAACTCTAGCTGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCCTG 82993 Query 23824 AGGTTGCGAGGAGGA 23838 ||| | |||| ||| Sbjct 82992 AGGCTTAGAGGTGGA 82978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337977426767480