Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq2666 82.4 6e-11 >seq2666 Length=20083 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||| | ||| | |||||||| ||||| || || || || || | ||| | |||||| Sbjct 9299 CACAAGGTGAAGTGTTGATTCCTTTTGGATGTTATAGTCTGCAAGAGTGTGACCATCTTC 9358 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 | ||| ||||| || | ||||| || ||||||||| | | | |||||||||||| Sbjct 9359 AAGTTGCTTGCCAGCGAAGATAAGTCTCTGTTGGTCTGCTTGGATCCCTTCTTTGTCGTG 9418 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTT 101208 ||| || || |||| | | || || || | | | ||| | ||| || ||||| Sbjct 9419 AATCTTGGCCTTGACATTGTCAACGGTGTCAGAGCTCTCAACTTCTAGGGTTATGGTTTT 9478 Query 101209 GCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||| || | ||||| | |||||| ||||| Sbjct 9479 GCCAGTTAGGGTTTTCACAAAAATCTGCAT 9508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409621806692790