Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq422 170 2e-37 >seq422 Length=101449 Score = 170 bits (188), Expect = 2e-37 Identities = 420/627 (67%), Gaps = 20/627 (3%) Strand=Plus/Plus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 ||||| || ||||||||||| | |||||||||||| ||||||||||| || || || Sbjct 43762 AAACAAGCGAAATCACAATGAAGACCTTCGTCTCTTGAGATCAGTTCGTTGGAGAAAGTA 43821 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 | ||| ||||||||||||| || || | ||| || |||| ||| || || ||| Sbjct 43822 AGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAAAATAGAACAAAAGCTACCGGAGAAG 43881 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG--- 4721 || || ||||| ||| ||||| || || | ||| |||| |||||| Sbjct 43882 AAGATACCTTCAACGCAAGCAAAAGCCACGATTCGTTCAGCGAA-------GCTTTGAGA 43934 Query 4722 -TCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATAT 4780 | | |||||||| | ||||| | ||||| ||| | || || ||||| || | || Sbjct 43935 TCCGTCGATCCATTTCATCGCCCATTGTGCTTTCTTCGTTACACAAGGAATGGTTTCAAT 43994 Query 4781 AGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCT 4840 ||| || | | | | | || |||| |||||||| || | || || || Sbjct 43995 TGCGCGGAAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACT 44054 Query 4841 ATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTC 4900 |||||| ||||| || ||||| || || || || ||||||||||||||| | ||| || Sbjct 44055 ATACATCTCAGAGTGAATATTCTCAATCGCGATTTGAAATCCGTAAAAGGCACGAGCCTC 44114 Query 4901 TGTTACTTGAACTTCGTTACA-AAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCAC 4959 | | ||||| ||| ||| |||| | || || || || || ||||| Sbjct 44115 GGAGATCTGAACATCG-GACATGAATCGGGTTGATAGATTCTCTAAAACGATGCCGTCTG 44173 Query 4960 TGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTC-AGGCTTAAG--TT 5016 || || || || || | || || || |||| ||||||| | ||||| | Sbjct 44174 ATGCGGCGAAGAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGTCGTCGTTTAAGGAAT 44233 Query 5017 TTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTT 5076 ||| ||||| | | ||||| || || ||| |||||||| | ||||| || || |||| Sbjct 44234 TTTCCCAGTCGCGATTATCTTGAGATAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTT 44293 Query 5077 CCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACA-AATCTG 5135 | |||||||||||||| ||| || | |||||| || || || | || ||| |||| Sbjct 44294 CGGCTTTTTTGTACATCTCCCATATCTGAGGATATTGGATTGGGAACAT-ACAGAATCGA 44352 Query 5136 T-TGTCGTTAGGTGTAAGAAGCGGTTC 5161 | || ||| ||||| |||| |||||| Sbjct 44353 TCTGGAGTT-GGTGTTAGAATCGGTTC 44378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427008951550730