Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq422 219 6e-52 seq144 152 7e-32 seq1401 107 3e-18 seq330 87.8 2e-12 >seq422 Length=101449 Score = 219 bits (242), Expect = 6e-52 Identities = 430/628 (68%), Gaps = 17/628 (3%) Strand=Plus/Plus Query 48135 ATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAAT 48194 || ||||| || |||||||||||||||||||| ||||| || | |||||| || || Sbjct 43759 ATCAAACAAGCGAAATCACAATGAAGACCTTCGTCTCTTGAGATCAGTTCGTTGGAGAAA 43818 Query 48195 GTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGA 48253 || || || ||||||| || ||||| || | ||| || || | | |||| | || || Sbjct 43819 GTAAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAAAATAGAA-CAAAAGCTACCGGA 43877 Query 48254 AAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTG---GCTTC 48310 ||||| || ||||| ||| ||||| || | || || || | || | | | Sbjct 43878 GAAGAAGATACCTTCAACGCAAGCAAAAGCCACGATTCGTTCAGCGAAGCTTTGAGATCC 43937 Query 48311 GTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTAT 48370 || | ||||| ||||| | || |||||| |||||||||| || ||||| || Sbjct 43938 GTCG---ATCCATTTCATCGCCCATTGTGCTTTCTTCGTTACACAAGGAATGGTTTCAAT 43994 Query 48371 AGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACT 48430 || |||||| | | | || ||| ||||||| | |||||||| | | ||||| Sbjct 43995 TGCGCGGAAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACT 44054 Query 48431 ATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTC 48490 |||||| || ||||||||||| ||||| || || |||||||||||||| | || || Sbjct 44055 ATACATCTCAGAGTGAATATTCTCAATCGCGATTTGAAATCCGTAAAAGGCACGAGCCTC 44114 Query 48491 TGTGATCTGTACCTCCGTACA-AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCAC 48549 | |||||| || | || ||| ||||| | | |||||| || || || || Sbjct 44115 GGAGATCTGAACAT-CGGACATGAATCGGGTTGATAGATTCTCTAAAACGATGCCGTCTG 44173 Query 48550 TAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGT-----TGGAAGTCAG 48604 || || || || || | ||| ||||| || || | | ||||| | ||| | Sbjct 44174 ATGCGGCGAAGAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGTCGTCGTTTAAGGAA- 44232 Query 48605 TTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGC 48664 || | |||||| |||||| |||| ||| |||||||| || ||||| ||||| || Sbjct 44233 -TTTTCCCAGTCGCGATTATCTTGAGATAGATCGACTTCTTCGGCGGTCCAGAATGAAGC 44291 Query 48665 CTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCT 48724 || |||||||| ||||| | |||||| | | |||||||||||||| ||| |||| Sbjct 44292 TTCGGCTTTTTTGTACATCTCCCATATCTGAGGATATTGGATTGGGAACATACAGAATCG 44351 Query 48725 ATTTGGATTTTTTGCAAGGATAGGTTCC 48752 || |||| || || || || |||||| Sbjct 44352 ATCTGGAGTTGGTGTTAGAATCGGTTCC 44379 >seq144 Length=115930 Score = 152 bits (168), Expect = 7e-32 Identities = 393/589 (67%), Gaps = 10/589 (2%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || ||||| || || | ||||| |||| | || ||||||||||| || || | | Sbjct 56097 CAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATCAATTCGTTAGAGAAGGTTAAA 56038 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 || ||||| ||||| ||||| || ||||| || || | || ||| | || || ||||| Sbjct 56037 CCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGGA-GCAGAAGCTACCGGAGAAGAA 55979 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT-- 48317 || ||||| ||| || || || || | || || | | | | | | || Sbjct 55978 GATACCTTCAACGCAAGCGAAAGC--TACGATTCGTTCAGCGAAGGTTTGAGATCCGTCG 55921 Query 48318 ATCCACCGTTGT-GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 ||||| || | ||||| | || |||||| || ||||| || ||||| || || Sbjct 55920 ATCCAA-GTCATCGCCCACTGTGCTTTCTTCGCGACGCAAGGAATGGTTTCAATCGCGCG 55862 Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436 |||||| | | | || ||| ||||||| | ||| ||||| | | ||||||||||| Sbjct 55861 GAAGAGATGATCTCTCTCTTTGTTATCTTTGATGTACGTATCGAGAAGGAGACTATACAT 55802 Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGAT 48496 ||||| |||||||| ||||| || ||||| |||||||| ||| | ||| || | || Sbjct 55801 CTCGGAATGAATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCCTCCGAGAC 55742 Query 48497 CTGTACCTCCGTACA-AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555 || || || | ||| |||||| ||| | |||||| || || || || || | Sbjct 55741 TTGAACATCTG-ACATGAATCGTGAAGCGAGATTCTCTAAAACGATACCGTCTGATGCGG 55683 Query 48556 CAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGT 48615 | || || || | || ||||| || || | ||| | | || || | ||| | Sbjct 55682 CGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTTTAGATTCTCCCAAT 55623 Query 48616 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTT 48675 | |||| ||||| ||| |||||||| || ||||| || ||||| || ||||| | Sbjct 55622 CGCGTCCGTCTTGTGATAGATCGACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTTTCT 55563 Query 48676 TATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCT 48724 ||||||| | ||| || | ||| || || || || ||| ||||| Sbjct 55562 TATACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 55514 >seq1401 Length=32814 Score = 107 bits (118), Expect = 3e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||||||||| || | || ||||||||||| || |||||| | | ||| | | || Sbjct 17025 AGTTCCTGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 16966 Query 78458 GTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCA 78516 ||| |||| ||||| ||||| || || | ||| ||||| || || || || | ||||| Sbjct 16965 GTAAGTTTTGATAGCAGATTCAATATCATCCTTG-TGAATGCCAACAGCAACCCTCATCA 16907 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 ||| || ||||| |||||||| | | | |||||| | ||||||| |||| | Sbjct 16906 GCATGTGTTGAGGCCTTTCAACAACTGTCCCTTGGACTTTCAAAAGGTATGATCTTTCAA 16847 Query 78577 AAGTTTTAAAACCAAA 78592 ||||||||| ||||| Sbjct 16846 GAGTTTTAAACCCAAA 16831 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| || || | ||||| || || | ||| | || | || |||||| | |||||| Sbjct 17341 CCTCCTTGGTCAACATATCGAGCAGTATCGTTAAATACACGCAGCATTGGGACAATACCA 17282 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||| ||||||||||| ||| ||| ||||||||| |||| ||||||||| || || Sbjct 17281 TTAGAAGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAACTGAA 17222 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || || || || || ||| | ||| || ||| | ||| || || || Sbjct 17221 ACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATATG 17162 Query 78339 CCCTCTATACTGTCATCCATCATG 78362 ||||| || || ||||| ||||| Sbjct 17161 CCCTCAATGCTATCATCTTTCATG 17138 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/117 (79%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 77490 AGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTG 77549 || ||||| |||||||||| || || || ||||||||||||||||| || | | | || Sbjct 18659 AGGATAAATGCATCTGCTAGACCTTGCACACCAATACCAATAGGTCTGTGACGCATGTTT 18600 Query 77550 GAAATTTTAGCT-TCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATT 77605 ||| |||| ||| ||| | |||||| ||||| | |||||||| ||||||||||| Sbjct 18599 GAAGTTTTTGCTGTCTCCAC-AGGATAGTAATTCACATCTATAATCTTATTGAGATT 18544 >seq330 Length=201778 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 77141 CAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAA 77200 ||| ||||||||| | ||||| || |||||| ||||| | | |||||||||| || | Sbjct 20538 CAAGACTCTACGACTATAAATGTTTGAGGTATAGGGTTCAAAACATTCATTGTTCCCAAG 20479 Query 77201 AATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATG 77260 ||| || || |||||||||||||| |||||||| | | | |||||||| || | Sbjct 20478 AATCTGGCTGGTTGAAGCAGTTGGCATTGGTGCCACTAGAAGAGAATTTCTGATTCCGTT 20419 Query 77261 TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCA 77320 || || | || | ||| |||| ||||| | || ||||| | |||| ||| Sbjct 20418 CTTTGAAATCATTTCCCTCAGAGCAGTCCAGTCCCATCGGTCAGAAGGGATTACATTCCA 20359 Query 77321 AAGATCGTATTGTAGAATTCC 77341 | ||| ||| |||||||| Sbjct 20358 CATATCAGGTTGAAGAATTCC 20338 Score = 86.0 bits (94), Expect = 9e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| | ||| || | || |||| |||||| || |||||| || ||| | || || Sbjct 18415 AGTTCCGGAATTGAAGAGAGTAGGAGTTGCATGAGTGAACCATCGTTGAGACATTAAATG 18356 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCA 78516 ||| |||| ||||| || || || || | ||| || || || || | || | ||||| Sbjct 18355 GTAAGTTTTGATAGCAGAATCAATATCTTCCTTG-TGGATGCCAACAGAAACCCTCATCA 18297 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 ||| || ||||| |||||||| || | | ||| || | ||||||| | || | Sbjct 18296 GCATGTGTTGAGGCCTTTCAACAACTTTGCCTTGGACTTTTAAGAGGTATGATCTCTCTA 18237 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 78610 |||||||||||||| || | |||| ||| || Sbjct 18236 GCGTTTTAAAACCAAAGTAATCGTATTCAAAATC 18203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694600982958400