Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23]
7,810 sequences; 167,352,128 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq422 219 6e-52
seq144 152 7e-32
seq1401 107 3e-18
seq330 87.8 2e-12
>seq422
Length=101449
Score = 219 bits (242), Expect = 6e-52
Identities = 430/628 (68%), Gaps = 17/628 (3%)
Strand=Plus/Plus
Query 48135 ATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAAT 48194
|| ||||| || |||||||||||||||||||| ||||| || | |||||| || ||
Sbjct 43759 ATCAAACAAGCGAAATCACAATGAAGACCTTCGTCTCTTGAGATCAGTTCGTTGGAGAAA 43818
Query 48195 GTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGA 48253
|| || || ||||||| || ||||| || | ||| || || | | |||| | || ||
Sbjct 43819 GTAAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAAAATAGAA-CAAAAGCTACCGGA 43877
Query 48254 AAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTG---GCTTC 48310
||||| || ||||| ||| ||||| || | || || || | || | | |
Sbjct 43878 GAAGAAGATACCTTCAACGCAAGCAAAAGCCACGATTCGTTCAGCGAAGCTTTGAGATCC 43937
Query 48311 GTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTAT 48370
|| | ||||| ||||| | || |||||| |||||||||| || ||||| ||
Sbjct 43938 GTCG---ATCCATTTCATCGCCCATTGTGCTTTCTTCGTTACACAAGGAATGGTTTCAAT 43994
Query 48371 AGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACT 48430
|| |||||| | | | || ||| ||||||| | |||||||| | | |||||
Sbjct 43995 TGCGCGGAAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACT 44054
Query 48431 ATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTC 48490
|||||| || ||||||||||| ||||| || || |||||||||||||| | || ||
Sbjct 44055 ATACATCTCAGAGTGAATATTCTCAATCGCGATTTGAAATCCGTAAAAGGCACGAGCCTC 44114
Query 48491 TGTGATCTGTACCTCCGTACA-AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCAC 48549
| |||||| || | || ||| ||||| | | |||||| || || || ||
Sbjct 44115 GGAGATCTGAACAT-CGGACATGAATCGGGTTGATAGATTCTCTAAAACGATGCCGTCTG 44173
Query 48550 TAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGT-----TGGAAGTCAG 48604
|| || || || || | ||| ||||| || || | | ||||| | ||| |
Sbjct 44174 ATGCGGCGAAGAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGTCGTCGTTTAAGGAA- 44232
Query 48605 TTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGC 48664
|| | |||||| |||||| |||| ||| |||||||| || ||||| ||||| ||
Sbjct 44233 -TTTTCCCAGTCGCGATTATCTTGAGATAGATCGACTTCTTCGGCGGTCCAGAATGAAGC 44291
Query 48665 CTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCT 48724
|| |||||||| ||||| | |||||| | | |||||||||||||| ||| ||||
Sbjct 44292 TTCGGCTTTTTTGTACATCTCCCATATCTGAGGATATTGGATTGGGAACATACAGAATCG 44351
Query 48725 ATTTGGATTTTTTGCAAGGATAGGTTCC 48752
|| |||| || || || || ||||||
Sbjct 44352 ATCTGGAGTTGGTGTTAGAATCGGTTCC 44379
>seq144
Length=115930
Score = 152 bits (168), Expect = 7e-32
Identities = 393/589 (67%), Gaps = 10/589 (2%)
Strand=Plus/Minus
Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200
|| || ||||| || || | ||||| |||| | || ||||||||||| || || | |
Sbjct 56097 CAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATCAATTCGTTAGAGAAGGTTAAA 56038
Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259
|| ||||| ||||| ||||| || ||||| || || | || ||| | || || |||||
Sbjct 56037 CCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGGA-GCAGAAGCTACCGGAGAAGAA 55979
Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT-- 48317
|| ||||| ||| || || || || | || || | | | | | | ||
Sbjct 55978 GATACCTTCAACGCAAGCGAAAGC--TACGATTCGTTCAGCGAAGGTTTGAGATCCGTCG 55921
Query 48318 ATCCACCGTTGT-GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376
||||| || | ||||| | || |||||| || ||||| || ||||| || ||
Sbjct 55920 ATCCAA-GTCATCGCCCACTGTGCTTTCTTCGCGACGCAAGGAATGGTTTCAATCGCGCG 55862
Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436
|||||| | | | || ||| ||||||| | ||| ||||| | | |||||||||||
Sbjct 55861 GAAGAGATGATCTCTCTCTTTGTTATCTTTGATGTACGTATCGAGAAGGAGACTATACAT 55802
Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGAT 48496
||||| |||||||| ||||| || ||||| |||||||| ||| | ||| || | ||
Sbjct 55801 CTCGGAATGAATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCCTCCGAGAC 55742
Query 48497 CTGTACCTCCGTACA-AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555
|| || || | ||| |||||| ||| | |||||| || || || || || |
Sbjct 55741 TTGAACATCTG-ACATGAATCGTGAAGCGAGATTCTCTAAAACGATACCGTCTGATGCGG 55683
Query 48556 CAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGT 48615
| || || || | || ||||| || || | ||| | | || || | ||| |
Sbjct 55682 CGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTTTAGATTCTCCCAAT 55623
Query 48616 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTT 48675
| |||| ||||| ||| |||||||| || ||||| || ||||| || ||||| |
Sbjct 55622 CGCGTCCGTCTTGTGATAGATCGACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTTTCT 55563
Query 48676 TATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCT 48724
||||||| | ||| || | ||| || || || || ||| |||||
Sbjct 55562 TATACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 55514
>seq1401
Length=32814
Score = 107 bits (118), Expect = 3e-18
Identities = 143/196 (73%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457
|||||||||||| || | || ||||||||||| || |||||| | | ||| | | ||
Sbjct 17025 AGTTCCTGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 16966
Query 78458 GTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCA 78516
||| |||| ||||| ||||| || || | ||| ||||| || || || || | |||||
Sbjct 16965 GTAAGTTTTGATAGCAGATTCAATATCATCCTTG-TGAATGCCAACAGCAACCCTCATCA 16907
Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576
||| || ||||| |||||||| | | | |||||| | ||||||| |||| |
Sbjct 16906 GCATGTGTTGAGGCCTTTCAACAACTGTCCCTTGGACTTTCAAAAGGTATGATCTTTCAA 16847
Query 78577 AAGTTTTAAAACCAAA 78592
||||||||| |||||
Sbjct 16846 GAGTTTTAAACCCAAA 16831
Score = 98.7 bits (108), Expect = 1e-15
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218
||||| || || | ||||| || || | ||| | || | || |||||| | ||||||
Sbjct 17341 CCTCCTTGGTCAACATATCGAGCAGTATCGTTAAATACACGCAGCATTGGGACAATACCA 17282
Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278
||||| ||||||||||| ||| ||| ||||||||| |||| ||||||||| || ||
Sbjct 17281 TTAGAAGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAACTGAA 17222
Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338
| || || || || || || ||| | ||| || ||| | ||| || || ||
Sbjct 17221 ACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATATG 17162
Query 78339 CCCTCTATACTGTCATCCATCATG 78362
||||| || || ||||| |||||
Sbjct 17161 CCCTCAATGCTATCATCTTTCATG 17138
Score = 91.5 bits (100), Expect = 2e-13
Identities = 92/117 (79%), Gaps = 2/117 (2%)
Strand=Plus/Minus
Query 77490 AGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTG 77549
|| ||||| |||||||||| || || || ||||||||||||||||| || | | | ||
Sbjct 18659 AGGATAAATGCATCTGCTAGACCTTGCACACCAATACCAATAGGTCTGTGACGCATGTTT 18600
Query 77550 GAAATTTTAGCT-TCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATT 77605
||| |||| ||| ||| | |||||| ||||| | |||||||| |||||||||||
Sbjct 18599 GAAGTTTTTGCTGTCTCCAC-AGGATAGTAATTCACATCTATAATCTTATTGAGATT 18544
>seq330
Length=201778
Score = 87.8 bits (96), Expect = 2e-12
Identities = 140/201 (70%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 77141 CAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAA 77200
||| ||||||||| | ||||| || |||||| ||||| | | |||||||||| || |
Sbjct 20538 CAAGACTCTACGACTATAAATGTTTGAGGTATAGGGTTCAAAACATTCATTGTTCCCAAG 20479
Query 77201 AATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATG 77260
||| || || |||||||||||||| |||||||| | | | |||||||| || |
Sbjct 20478 AATCTGGCTGGTTGAAGCAGTTGGCATTGGTGCCACTAGAAGAGAATTTCTGATTCCGTT 20419
Query 77261 TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCA 77320
|| || | || | ||| |||| ||||| | || ||||| | |||| |||
Sbjct 20418 CTTTGAAATCATTTCCCTCAGAGCAGTCCAGTCCCATCGGTCAGAAGGGATTACATTCCA 20359
Query 77321 AAGATCGTATTGTAGAATTCC 77341
| ||| ||| ||||||||
Sbjct 20358 CATATCAGGTTGAAGAATTCC 20338
Score = 86.0 bits (94), Expect = 9e-12
Identities = 149/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457
|||||| | ||| || | || |||| |||||| || |||||| || ||| | || ||
Sbjct 18415 AGTTCCGGAATTGAAGAGAGTAGGAGTTGCATGAGTGAACCATCGTTGAGACATTAAATG 18356
Query 78458 GTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCA 78516
||| |||| ||||| || || || || | ||| || || || || | || | |||||
Sbjct 18355 GTAAGTTTTGATAGCAGAATCAATATCTTCCTTG-TGGATGCCAACAGAAACCCTCATCA 18297
Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576
||| || ||||| |||||||| || | | ||| || | ||||||| | || |
Sbjct 18296 GCATGTGTTGAGGCCTTTCAACAACTTTGCCTTGGACTTTTAAGAGGTATGATCTCTCTA 18237
Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 78610
|||||||||||||| || | |||| ||| ||
Sbjct 18236 GCGTTTTAAAACCAAAGTAATCGTATTCAAAATC 18203
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694600982958400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |