Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq422 206 4e-48 seq1401 116 5e-21 seq330 107 3e-18 >seq422 Length=101449 Score = 206 bits (228), Expect = 4e-48 Identities = 429/628 (68%), Gaps = 17/628 (3%) Strand=Plus/Plus Query 46624 ATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAAT 46683 || ||||| || |||||||||||||| ||||| ||||| || | |||||| || || Sbjct 43759 ATCAAACAAGCGAAATCACAATGAAGACCTTCGTCTCTTGAGATCAGTTCGTTGGAGAAA 43818 Query 46684 GTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGA 46742 || || |||||||||| || || || || | ||| || |||| | |||| | || || Sbjct 43819 GTAAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAAAATAGAA-CAAAAGCTACCGGA 43877 Query 46743 AAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACT--GGCATCA 46800 ||||| || ||||| || || || || || | || || || | || | ||| Sbjct 43878 GAAGAAGATACCTTCAACGCAAGCAAAAGCCACGATTCGTTCAGCGAAGCTTTGAGATCC 43937 Query 46801 TTATGAATCCACCTTTGA--GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTA 46858 | ||||| ||| | ||||| | || || ||| |||||||||| || ||||| | Sbjct 43938 GTCG--ATCCA--TTTCATCGCCCATTGTGCTTTCTTCGTTACACAAGGAATGGTTTCAA 43993 Query 46859 TAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGAC 46918 | || |||||| | | | || | ||||||| | ||| ||||| | | |||| Sbjct 43994 TTGCGCGGAAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGAC 44053 Query 46919 TATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTT 46978 ||||||| || || ||||| || ||||| || || |||||||||||||| | || | Sbjct 44054 TATACATCTCAGAGTGAATATTCTCAATCGCGATTTGAAATCCGTAAAAGGCACGAGCCT 44113 Query 46979 CAGTAATCTGTACCTCTGTACAA-AATCGTTCAGACAAATTCTCATTCACTATTCCATCA 47037 | | ||||| || || | ||| ||||| || | |||||| || || || || Sbjct 44114 CGGAGATCTGAACATCGG-ACATGAATCGGGTTGATAGATTCTCTAAAACGATGCCGTCT 44172 Query 47038 CTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGG----TAGTCAG 47093 || || || || || | ||| ||||| || || | | ||| ||| || | Sbjct 44173 GATGCGGCGAAGAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGTCGTCGTTTAAGGAA 44232 Query 47094 TTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGC 47153 ||| | |||||| |||||| |||| ||| |||||||| || ||||||||||| || Sbjct 44233 TTT-TCCCAGTCGCGATTATCTTGAGATAGATCGACTTCTTCGGCGGTCCAGAATGAAGC 44291 Query 47154 CTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCT 47213 || |||||||| ||||| | |||||| | | |||||||||| || || ||| |||| Sbjct 44292 TTCGGCTTTTTTGTACATCTCCCATATCTGAGGATATTGGATTGGGAACATACAGAATCG 44351 Query 47214 ATTTGGATTTTTTGCAAGTATAGGTTCC 47241 || |||| || || || || |||||| Sbjct 44352 ATCTGGAGTTGGTGTTAGAATCGGTTCC 44379 >seq1401 Length=32814 Score = 116 bits (128), Expect = 5e-21 Identities = 145/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||||||||| || | |||||||||||||||||||||||| | | ||| | | || Sbjct 17025 AGTTCCTGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 16966 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 ||| |||| ||| | | ||| ||||| | ||| ||||| || ||||| || | ||||| Sbjct 16965 GTAAGTTTTGATAGCAGATTCAATATCATCCTTG-TGAATGCCAACAGCAACCCTCATCA 16907 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 ||| || ||||| | ||| ||| | | | |||||| | ||||||| |||| | Sbjct 16906 GCATGTGTTGAGGCCTTTCAACAACTGTCCCTTGGACTTTCAAAAGGTATGATCTTTCAA 16847 Query 77172 AAGTTTTAAAACCAAA 77187 ||||||||| ||||| Sbjct 16846 GAGTTTTAAACCCAAA 16831 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| || || | ||||| ||||| | ||| | || | || |||||| | ||| || Sbjct 17341 CCTCCTTGGTCAACATATCGAGCAGTATCGTTAAATACACGCAGCATTGGGACAATACCA 17282 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||||| || |||||||| ||| ||| ||||||||| ||||||||||||| || || Sbjct 17281 TTAGAAGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAACTGAA 17222 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || || || || ||| || | |||||| ||| | ||| ||||| ||| Sbjct 17221 ACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATATG 17162 Query 76934 CCCTCTATACTATCATCCATCATG 76957 ||||| || |||||||| ||||| Sbjct 17161 CCCTCAATGCTATCATCTTTCATG 17138 Score = 96.9 bits (106), Expect = 5e-15 Identities = 93/117 (79%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 76085 AGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTG 76144 || ||||||||||||||||| || || || ||||||||||||||||| || | | | || Sbjct 18659 AGGATAAATGCATCTGCTAGACCTTGCACACCAATACCAATAGGTCTGTGACGCATGTTT 18600 Query 76145 GAAATTTCAGCT-TCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATT 76200 ||| ||| ||| ||| | ||| || ||||| | ||||||||| ||||||||||| Sbjct 18599 GAAGTTTTTGCTGTCTCCAC-AGGATAGTAATTCACATCTATAATCTTATTGAGATT 18544 >seq330 Length=201778 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| || || | ||| | |||| | ||| | |||| || |||||||| ||| || Sbjct 18741 CCTCCTTGGTCAACATAACGAACAGTATCATTGAATACTCGCAGCATTGGAACAATTCCA 18682 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||||||| ||||| || ||| ||| ||||||||| ||||||||| || | || Sbjct 18681 TTAGATGATCCATTAGTGCCACGAATGTAACTTCCAGCTGCACGAATGTTGTGGACTGAA 18622 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || || || || | | || | |||||| ||||||||||||||| || Sbjct 18621 ACACCAATACCCCCGGCTGATCTGCTTATAACAGCACAATCTTTCAATGTGTCATATATA 18562 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||| || ||||||||| ||||| | ||||| |||||| Sbjct 18561 CCCTCGATGCTATCATCCTTCATGCATATCAGAAAGCAGCTA 18520 Score = 95.1 bits (104), Expect = 2e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| | ||| || | ||||||| |||||||||||||||| || ||| | || || Sbjct 18415 AGTTCCGGAATTGAAGAGAGTAGGAGTTGCATGAGTGAACCATCGTTGAGACATTAAATG 18356 Query 77053 GTATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCA 77111 ||| |||| ||| | | || ||||| | ||| || || || |||| || | ||||| Sbjct 18355 GTAAGTTTTGATAGCAGAATCAATATCTTCCTTG-TGGATGCCAACAGAAACCCTCATCA 18297 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 ||| || ||||| | ||| ||| || | | ||| || | ||||||| | || | Sbjct 18296 GCATGTGTTGAGGCCTTTCAACAACTTTGCCTTGGACTTTTAAGAGGTATGATCTCTCTA 18237 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 77205 |||||||||||||| || | |||| ||| || Sbjct 18236 GCGTTTTAAAACCAAAGTAATCGTATTCAAAATC 18203 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 76273 AGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTC 76332 ||| |||||||| |||||||| || ||| ||| | | | | | || | || ||||| Sbjct 19596 AGCAATAGATGCAAGATTACACACAGCTGTCTCTGTTGGACTAGTGTACTCGATGATCTC 19537 Query 76333 CGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACA 76392 |||||||| ||| | |||| || || |||||||||||||| ||||| || ||||||| Sbjct 19536 CGTGCATAAGTTAGAAGACTTTATGGTACCAAGATTTTGTTGATTGCTTTTCCTGTTACA 19477 Query 76393 TGAGTCCT 76400 || |||| Sbjct 19476 CGAATCCT 19469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712864799779200