Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq1269 131 2e-25 seq504 102 1e-16 seq317 82.4 9e-11 >seq1269 Length=73620 Score = 131 bits (144), Expect = 2e-25 Identities = 319/449 (71%), Gaps = 41/449 (9%) Strand=Plus/Minus Query 178180 TTCAGTGCGATGCACGGTTC-TCTGGTTACTTCCTCGCTGGT-TC-GTGAAACCACCGAG 178236 || ||||| ||||| ||||| | |||| ||||| | | | || || | |||||||| || Sbjct 6661 TTTAGTGCTATGCATGGTTCCTTTGGTAACTTC-TAGTTTGTATCAGGGAAACCACAGAA 6603 Query 178237 AACGAAAGTCAGAACT-ATGGTTA---CAAGTTCGGTC-AAGAAGAAGAGACCT-ACAAC 178290 || ||| | || | ||||| || ||||||| |||||||||||| || ||||| Sbjct 6602 AATGAATCTGCTAATGCAAGGTTAGGCCAGATTCGGTCCAAGAAGAAGAGAACTTACAAC 6543 Query 178291 ATC-GTT--GCTGCTCATGGTTA-CTTCGGTCGCCTG--ATCTTCCAATACGC---ATCC 178341 || ||| |||||||||||||| || || || || ||||||||||| || | | Sbjct 6542 ATTTGTTAGGCTGCTCATGGTTATTTTTGGCCGATTGACATCTTCCAATATGCTAGTTTC 6483 Query 178342 TTCAACAACTCC-CGTTCGCTGCACTTCTTC-CT-CGCAGCATGG-CCTGTTGT-CGGTA 178396 ||||||||||| ||||| | || |||||| || || || ||| || || || |||| Sbjct 6482 ATCAACAACTCCTCGTTCTTTACATTTCTTCTCTAGGCGGCTTGGCCCGGTAGTAGGGTA 6423 Query 178397 TCTG-GTTCAC-TGCTCTTGGTGTTAGCA-CCATGGCATTCAACCTCAACGGTTTCAACT 178453 | || ||| || |||| | ||| | | | | ||||| |||||||| || |||||||| | Sbjct 6422 TTTGTGTTTACTTGCTTTAGGTTTATGTAGCTATGGCTTTCAACCTAAATGGTTTCAATT 6363 Query 178454 TCAACCAGTC-CATCA------TGGATAGTCAGGGCAAAGT-CCTGAACACCTGGGCAGA 178505 |||||| | |||| | ||||| ||| | | |||| || ||||| || Sbjct 6362 TCAACCCCCCAAATCAGTGTAGTTGATAGCAAGGACGTGTTAATTGAATACTTGGGCTGA 6303 Query 178506 CGTTCTCAACCGTGCTGGTCTT-GGTATGGAAGTCAT-GCACGAGCGTA-ATGCTC--AC 178560 || | ||||||| | ||| ||||||||||| || ||| || |||| | |||| || Sbjct 6302 TATTATTAACCGTGGTAACCTTGGGTATGGAAGTTATGGCATGAACGTACACGCTCCAAC 6243 Query 178561 -AACTTCCCTCTTGACCTCGCTGCTGCTG 178588 |||||||| || ||||| ||||||| || Sbjct 6242 GAACTTCCCACTAGACCTAGCTGCTGTTG 6214 >seq504 Length=87311 Score = 102 bits (112), Expect = 1e-16 Identities = 366/543 (67%), Gaps = 57/543 (10%) Strand=Plus/Minus Query 179118 GGGGGACTATGGCCTTT-TGTGGC-GCTCCACGGTGCCTTCGCTCTCATAGGT--TTCAT 179173 || || || ||| |||| | |||| |||| |||| | ||||| | |||||| ||||| Sbjct 51430 GGTGGTCTGTGGGCTTTGTCTGGCTGCTC-ACGGCCCTTTCGCATTAATAGGTGTTTCAT 51372 Query 179174 GCT-TCGGC---AGTTTGAAATCGCACGTCTAGTCGGTATTCGT-CCTTAC-AATGCAAT 179227 | | |||| | |||||| | || | ||| | | ||||| ||||| |||||||| Sbjct 51371 GTTATCGGTTCAATTTTGAACTTGCTCATCT-GCCTCAATTCGCACCTTATTAATGCAAT 51313 Query 179228 CGCGTTTTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTC---TCATGTATCCTC--TC 179282 ||| || ||||||||||||||||| ||||| ||||| || | | || ||||| | | Sbjct 51312 CGCATTCTCTGGTCCAATTGCTGT-TTTGTTTCTGTCTTCCGAGTAATTTATCCACGTTA 51254 Query 179283 GGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGATTTTCCGCTTCCTA 179342 || || | || || |||||||||||| | || | | || || || ||| | Sbjct 51253 GGTCAAT-CTGGT-GTTCTTTGCGCC--------TATTTTTACCTATATTTCGATTCATC 51204 Query 179343 CTCTTCCTAC--AGGGCTTCCACAACTGGACGCTCAACCCGTTCCACATGATGGG-TGTA 179399 || || | | ||| || || || ||||| | ||||| || || |||||||| || Sbjct 51203 CTTTTTTTTCCAAGGCGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAAGTC 51144 Query 179400 GCAGGTATCCTG--GGCGGAGCATTGCTTTG-TGCCATTCATGGTGCTAC-AGTAGAGAA 179455 || ||| | ||| |||| || |||| || || |||||||||||||| ||||| || Sbjct 51143 GCCGGTGTACTGGCGGCGCGGCTCTGCTATGCGGCTATTCATGGTGCTACTGGTAGAAAA 51084 Query 179456 CACACTCTTTGAAGACAGTGACCAAT---------CAAATACATT-CAAGGCATTCGAGC 179505 || | |||||||| ||| || | ||||||| | || || | | Sbjct 51083 TACTTTATTTGAAGATGGTGGGGGATTTTGTGGCAGAGATACATTCCGCTGCTTTTAACC 51024 Query 179506 CTACACAAGAAGAGGAGACCTA-TTCGATGGT-TACTGC--CAACCGTTTCTGGTCTCAG 179561 | || |||| || || || || ||| ||||| || || || ||| || ||||| || Sbjct 51023 CAACTCAAGCCGAAGAAACTTATTTCAATGGTCAACCGCTACACCCGCTTTTGGTCACAA 50964 Query 179562 ATCTTT--GGTATCGCCTTCAGCAA--TAAGCGTTGGCT--ACATTTCT--TTATGTTGT 179613 |||||| || | || || ||| ||| |||||||| |||||||| | ||||| | Sbjct 50963 ATCTTTTGGGGGTTGCTTTATCCAATTTAAACGTTGGCTTCACATTTCTTGTCATGTTAT 50904 Query 179614 TTG 179616 ||| Sbjct 50903 TTG 50901 >seq317 Length=114279 Score = 82.4 bits (90), Expect = 9e-11 Identities = 159/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 176152 TTGAGTGTGCTGACGATCAGTATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCA 176211 ||||||||| || || || | || || || ||||||||||| ||| |||| | Sbjct 8578 TTGAGTGTGAAGAAGACGTTTACGTCCTCGACGCAGCTGAGGAAGCTGGAATTGACTTGC 8637 Query 176212 ACTACTCGTGCCGCGCTGGTGCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGG 176271 ||||| ||||| |||||| | || || | ||||| || ||| | || || || | Sbjct 8638 CTTACTCATGCCGTGCTGGTTCTTGCTCAACCTGTGCTGGTAAAGTTGAGTCTGGTACTG 8697 Query 176272 TAGATCAAAGCGATCAATCGTTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGA 176331 | ||||| || || |||||||||||||| ||||| | || ||| | |||| | Sbjct 8698 TTGATCAGTCTGACCAGAGTTTCCTTGATGATGAACAGATTGGTGAAGGATATGTTCTCA 8757 Query 176332 CTTGTGTTTCATATCCTACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGA 176386 |||||| | |||||||| ||| ||| ||| ||| | ||||||| || Sbjct 8758 CTTGTGCGGCTTATCCTACTTCTGATGTTGTCATTAGAACTCACCAAGAAGAAGA 8812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596248985509600