Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq1269 113 5e-20 seq504 104 3e-17 >seq1269 Length=73620 Score = 113 bits (124), Expect = 5e-20 Identities = 314/448 (70%), Gaps = 39/448 (9%) Strand=Plus/Minus Query 169934 TTTAGCGCGATGCACGGTAGCCTCG-TCACTTCGAGTCT-TGTCCGTGAAACCACCGAGA 169991 ||||| || ||||| ||| | | | | ||||| ||| | | || | |||||||| || | Sbjct 6661 TTTAGTGCTATGCATGGTTCCTTTGGTAACTTCTAGTTTGTATCAGGGAAACCACAGAAA 6602 Query 169992 ACGAGTCCCAGAACT-ATGGTTA---CAAGTTCGGTC-AAGAAGAAGAGACCT-ACAACA 170045 | || || || | ||||| || ||||||| |||||||||||| || |||||| Sbjct 6601 ATGAATCTGCTAATGCAAGGTTAGGCCAGATTCGGTCCAAGAAGAAGAGAACTTACAACA 6542 Query 170046 TC-GTT--GCCGCTCACGGTTACTTC-GGTCGCCTGA--TCTTCCAATACGC---TTCCT 170096 | ||| || ||||| ||||| || || || ||| |||||||||| || || | Sbjct 6541 TTTGTTAGGCTGCTCATGGTTATTTTTGGCCGATTGACATCTTCCAATATGCTAGTTTCA 6482 Query 170097 TCAACAACTCC-CGTTCACTGCACTTCTTC-CT-CGCAGCATGG-CCTGTTGT-TGGCAT 170151 ||||||||||| ||||| | || |||||| || || || ||| || || || || || Sbjct 6481 TCAACAACTCCTCGTTCTTTACATTTCTTCTCTAGGCGGCTTGGCCCGGTAGTAGGGTAT 6422 Query 170152 CTG-GTTCAC-CGCTCTTGGTGTCTCCA-CGATGGCGTTCAACCTGAACGGTTTCAACTT 170208 || ||| || ||| | ||| | | | | ||||| |||||||| || |||||||| || Sbjct 6421 TTGTGTTTACTTGCTTTAGGTTTATGTAGCTATGGCTTTCAACCTAAATGGTTTCAATTT 6362 Query 170209 CAACCAGTC-CATCA---TCGATGGT--CAGGGTCGTGT--GCTCAACACCTGGGCAGAC 170260 ||||| | |||| | | || | || || ||||| | || || ||||| || Sbjct 6361 CAACCCCCCAAATCAGTGTAGTTGATAGCAAGGACGTGTTAATTGAATACTTGGGCTGAT 6302 Query 170261 GTTCTCAACCGTGCTGGTCTT-GGCATGGAAGTGAT-GCACGAGCGTA-ATGCTC--AC- 170314 || | ||||||| | ||| || |||||||| || ||| || |||| | |||| || Sbjct 6301 ATTATTAACCGTGGTAACCTTGGGTATGGAAGTTATGGCATGAACGTACACGCTCCAACG 6242 Query 170315 AACTTCCCTCTCGACCTCGCTGCTGCTG 170342 |||||||| || ||||| ||||||| || Sbjct 6241 AACTTCCCACTAGACCTAGCTGCTGTTG 6214 >seq504 Length=87311 Score = 104 bits (114), Expect = 3e-17 Identities = 190/268 (71%), Gaps = 23/268 (9%) Strand=Plus/Minus Query 170976 AATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTCC---TCATCTAT 171032 ||||||||||| ||||||||||| || ||||| ||||| || |||| | || ||| Sbjct 51320 AATGCAATCGCATTCTCTGGTCCAATTGCTGT-TTTGTTTCTGTCTTCCGAGTAATTTAT 51262 Query 171033 CCTC--TTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAATCTTCC 171090 || | | || || || || |||||| || ||| | || | | || || | Sbjct 51261 CCACGTTAGGTCAATCTGGT--GTTCTTTGCGCCT--------ATTTTTACCTATATTTC 51212 Query 171091 GCTTCCTGC-TCTTCCTGCAAGG-TTTCCACAACTGGACACTGAATCCATTTCATATGAT 171148 | ||| | | | || | ||||| || || || |||||| |||| |||||||||||||| Sbjct 51211 GATTCATCCTTTTTTTTCCAAGGCGTTTCATAATTGGACATTGAACCCATTTCATATGAT 51152 Query 171149 GGG-TGTTGCAGGTATCCT--CGGCGGTGCATTGCT-TTCTGCAATTCATGGTGTTAC-A 171203 ||| || || ||| | || ||||| || |||| | | || |||||||||| ||| Sbjct 51151 GGGAAGTCGCCGGTGTACTGGCGGCGCGGCTCTGCTATGCGGCTATTCATGGTGCTACTG 51092 Query 171204 GTAGAGAATACTTTGTATGAAGATGGTG 171231 ||||| |||||||| | ||||||||||| Sbjct 51091 GTAGAAAATACTTTATTTGAAGATGGTG 51064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592140586631200