Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq422 176 5e-39 seq144 145 8e-30 >seq422 Length=101449 Score = 176 bits (194), Expect = 5e-39 Identities = 466/700 (67%), Gaps = 20/700 (3%) Strand=Plus/Plus Query 23340 CCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAGTTT 23399 || ||| |||||||| ||||||||||||| |||||||||| ||| || || | | Sbjct 43596 CCGATCCGCTACAAAATCAATATATTGACTCATCAAATCACGGTTCATCCCAACCAACGC 43655 Query 23400 TACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTATT-- 23457 |||| ||| || | | || | | ||||| ||| ||||| || ||| Sbjct 43656 GCAAGGAAGCGCGTCGCACACAAACTCTCTCTCAATCTCAACCGCATCACGAACAATTGA 43715 Query 23458 -TGAACAATAACTTCTTCACTAGG-TGGATATTTTA-AATACTTAAACAATAAACATGCA 23514 | ||| | ||||||||| | | || || | || ||| || | ||||| || Sbjct 43716 TTTCACACGA---TCTTCACTAAGCTTGA-ATCGAAGAAGACTATAA-ATCAAACAAGCG 43770 Query 23515 AAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGC 23574 ||||||||||| || ||||| || || |||| ||| || || || || | ||| ||| Sbjct 43771 AAATCACAATGAAGACCTTCGTCTCTTGAGATCAGTTCGTTGGAGAAAGTAAGTCCAGGC 43830 Query 23575 ATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT-CCGGAAAAGAAAATACC 23633 ||||| |||||||| || | ||| || || | | |||| | | ||||| ||||| ||||| Sbjct 43831 ATTAAACCTCGTTTCTTCAACCAGAAAATAGAA-CAAAAGCTACCGGAGAAGAAGATACC 43889 Query 23634 CTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAA-ATCC 23692 ||||| ||||| ||||| | ||| | | || || || ||| | |||| Sbjct 43890 TTCAACGCAAGCAAAAGCCACGATTCGTTCAGCGAA----GCTTTGAGATCCGTCGATCC 43945 Query 23693 AtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGA 23752 |||| | | ||| | || ||| ||||||| ||| ||||||||||| |||| Sbjct 43946 ATTTCATCGCCCATTGTGCTTTCTTCGTTACACAAGGAATGGTTTCAATTGCGCGGAAGA 44005 Query 23753 GAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAG 23812 || | | | |||| |||||| | ||||| ||||| | || | ||||||||| |||| Sbjct 44006 GATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTCAG 44065 Query 23813 AATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAA 23872 | |||||||| ||||| || || ||||| || ||||| | ||| || || | |||| Sbjct 44066 AGTGAATATTCTCAATCGCGATTTGAAATCCGTAAAAGGCACGAGCCTCGGAGATCTGAA 44125 Query 23873 CATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGA 23932 |||| | |||| | | || ||| || ||| || || || || || |||| Sbjct 44126 CATCGGACATGAATCGGGTTGATAGATTCTCTAAAACGATGCCGTCTGATGCGGCGAAGA 44185 Query 23933 AAGCAAGAACATATTTTATAAAATGTCTT---TCATCAGTTGATAATTTTTTCCAATCAT 23989 | || || || | ||| || || |||| | || || || | | |||| ||| || Sbjct 44186 AGGCGAGTACGTGTTTGATGAAGTGTCGTTCGTCGTCGTTTAAGGAATTTTCCCAGTCGC 44245 Query 23990 TAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 | |||||| |||| ||| ||||| || | ||||| || Sbjct 44246 GATTATCTTGAGATAGATCGACTTCTTCGGCGGTCCAGAA 44285 >seq144 Length=115930 Score = 145 bits (160), Expect = 8e-30 Identities = 364/547 (67%), Gaps = 7/547 (1%) Strand=Plus/Minus Query 23509 CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAAT 23568 || || ||||| || |||| |||||| || | | |||||||| ||||| || ||||| Sbjct 56097 CAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATCAATTCGTTAGAGAAGGTTAAA 56038 Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT-CCGGAAAAGAA 23627 || ||||| | ||||||||| |||| ||| || || | |||| | | | ||||| ||||| Sbjct 56037 CCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGG-AGCAGAAGCTACCGGAGAAGAA 55979 Query 23628 AATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGA 23687 ||||| ||||| || || || || | ||| | | || ||| | | | | Sbjct 55978 GATACCTTCAACGCAAGCGAAAGCTACGATTCGTTCAGCGAAGGTT---TGAGATCCGTC 55922 Query 23688 AATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTT 23747 ||||| | | | ||| | || ||| || || ||| |||||||| || Sbjct 55921 GATCCAAGTCATCGCCCACTGTGCTTTCTTCGCGACGCAAGGAATGGTTTCAATCGCGCG 55862 Query 23748 TAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACAT 23807 |||||| | | | |||| |||||| | || || ||||| | || | ||||||||| Sbjct 55861 GAAGAGATGATCTCTCTCTTTGTTATCTTTGATGTACGTATCGAGAAGGAGACTATACAT 55802 Query 23808 TTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAA 23867 || ||||||||||| ||||| || ||||| || || || ||| | || || || | Sbjct 55801 CTCGGAATGAATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCCTCCGAGAC 55742 Query 23868 TTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGC 23927 ||||||||| | |||| | ||| | ||| || ||| ||||| || || || Sbjct 55741 TTGAACATCTGACATGAATCGTGAAGCGAGATTCTCTAAAACGATACCGTCTGATGCGGC 55682 Query 23928 AAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTG-ATAATTTTTTCCAAT 23986 |||||||| || || | ||| || || || | |||| | || | || || | ||||| Sbjct 55681 GAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCA-CCGTCGTTTAGATTCTCCCAAT 55623 Query 23987 CATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGCT 24046 | |||| ||||| ||| ||||| || | ||||| || ||| ||| || Sbjct 55622 CGCGTCCGTCTTGTGATAGATCGACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTTTCT 55563 Query 24047 TATACAT 24053 ||||||| Sbjct 55562 TATACAT 55556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521437089734000