Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23]
7,810 sequences; 167,352,128 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq516 116 3e-21
seq308 109 5e-19
seq275 107 2e-18
seq3586 82.4 7e-11
seq2666 82.4 7e-11
>seq516
Length=37039
Score = 116 bits (128), Expect = 3e-21
Identities = 168/231 (73%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| ||||| | || || || || || ||||||||||||||| || || |
Sbjct 10217 GCCACCGCGAAGACGAAGGACAAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGC 10276
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGG 41753
|| ||||| | || ||||||||||||||||||||||| || | |||||||| | ||
Sbjct 10277 AAGAGTGCGACCATCTTCGAGCTGCTTGCCGGCGAATATGAGTCTTTGTTGGTCTGGTGG 10336
Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGAC--TC 41811
|| | || |||||||| ||| || |||| || | || | || || | ||
Sbjct 10337 GATCCCT-TCCTTGTCTTGGATCTTGGCCTTC-ACATTGTCA-ATGGTATCTGAGCTTTC 10393
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||||| ||||| |||||||| || || ||||| ||||| ||||||||
Sbjct 10394 AACCTCCAAAGTTATGGTTTTACCGGTAAGGGTCTTGACGAATATCTGCAT 10444
>seq308
Length=205501
Score = 109 bits (120), Expect = 5e-19
Identities = 168/233 (72%), Gaps = 10/233 (4%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || | |||||| | |||| ||||| || ||||||||| ||||| || || |
Sbjct 130708 GCCACCTCTTAGACGAAGGACCAAGTGCAGGGTTGACTCCTTCTGGATGTTGTAATCAGC 130767
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGG 41753
|| || || | || || ||||| || || ||||| || || | |||||||||| | ||
Sbjct 130768 AAGAGTTCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGG 130827
Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGAC 41809
|| | || |||||||| ||||||| |||| || | | || ||||| ||| |
Sbjct 130828 GATCCCT-TCCTTGTCTTGGATTTTTGTCTTC-ACATTGTCGACTGTGTCCGAGCT---C 130882
Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||| |||| ||||| ||||| || || || ||||| || |||||||||||
Sbjct 130883 TCCACTTCCAAAGTTATGGTTTTTCCGGTAAGGGTCTTAACAAAAATCTGCAT 130935
Score = 109 bits (120), Expect = 5e-19
Identities = 157/215 (73%), Gaps = 10/215 (5%)
Strand=Plus/Plus
Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712
||| ||||| || || ||||||||||||||| || || | || ||||| | || ||
Sbjct 130954 CACAAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGCAAGTGTGCGACCATCTTC 131013
Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGGAACGCTCTCCTTGTCCA 41771
||||||||||||||||||||| || | ||||||||| | | || | || ||||||| |
Sbjct 131014 GAGCTGCTTGCCGGCGAATATGAGTCTCTGTTGGTCTGGTGAGATCCCT-TCCTTGT-CT 131071
Query 41772 TGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATC 41827
|| | || || | || | | || || || ||| || ||||||| |||||
Sbjct 131072 TGGATCTTGGCCTTTACATTGTCAACGGTATCTGAGCT---TTCAACCTCCAAAGTTATG 131128
Query 41828 GTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||||| || || ||||| ||||| ||||||||
Sbjct 131129 GTTTTACCGGTAAGGGTCTTGACGAATATCTGCAT 131163
Score = 91.5 bits (100), Expect = 1e-13
Identities = 164/233 (70%), Gaps = 10/233 (4%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | || || || || || ||| || || ||||| ||||| |
Sbjct 130481 CCACCGCGGAGACGGAGAACAAGGTGAAGAGTCGACTCTTTTTGGATGTTGTAGTCTGCA 130540
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC-GGG 41754
|| || || | || || |||||||| || || || || || | ||||||||| | |||
Sbjct 130541 AGAGTACGACCATCCTCAAGCTGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGTGGG 130600
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810
| | || || ||||| ||| | ||||| | || | |||||||| |||| |
Sbjct 130601 ATCCCT-TCTTTGTCT-TGAATCTTTGCCTTCACATTATCTACAGTGTCTGAGCTC---T 130655
Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
| ||||||| ||||| ||||| || || || ||||| || ||||||||||||
Sbjct 130656 CAACCTCCAAAGTTATGGTTTTTCCGGTTAGGGTCTTGACAAAAATCTGCATG 130708
>seq275
Length=143682
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || |||||||| || |||| ||| || || ||||||||| ||||| ||||| |
Sbjct 139554 CCACCACGTAGACGCAAGACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAGTCAGCC 139495
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| || || |||| || || ||||| |||||||| |||| | ||| ||||||| ||
Sbjct 139494 AAAGTACGGCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGG 139435
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | ||||||||| |||||| |||| ||| | | | ||||| ||||||
Sbjct 139434 ATTCCCTCCTTGTCTTGGATTTTA-GCTTTCACGTTGTCGATGGTGTCAGAACTCTCCAC 139376
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||| || || || || || |||| ||||| ||||| || |||||
Sbjct 139375 CTCCAAAGTGATAGTCTTTCCGGTCAAGGTCTTAACGAAGATTTGCAT 139328
Score = 102 bits (112), Expect = 8e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| || |||| || || || |||||||||||| || || ||||
Sbjct 123444 CCTCCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGAATATTGTAATCGGCC 123385
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| ||| || | || || |||||||| |||||||| |||| | ||| ||||||| ||
Sbjct 123384 AAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGG 123325
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | ||| |||| | || | || |||| ||| | | | |||||| ||||||
Sbjct 123324 ATACCCTCTTTGT-CTTGGATCTTGGCTTTCACGTTGTCAATGGTGTCGGAGCTCTCCAC 123266
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || || || ||||| |||| ||||| ||||| ||||||||
Sbjct 123265 CTCGAGGGTAATGGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 123218
Score = 100 bits (110), Expect = 3e-16
Identities = 163/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||| || || || ||||||||| ||||| ||||| |
Sbjct 124129 CCACCACGGAGACGGAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCA 124070
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| | || || |||||||| || ||||| || || ||||| || |||| ||
Sbjct 124069 AGTGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGG 124010
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTC---GCTCGACTC 41811
| || ||||||||| ||| || ||| | | | | | ||||| |||| ||
Sbjct 124009 ATGCCTTCCTTGTCCTGGATCTTGGCCTTAACATTATCA-ATGGTGTCTGAGCTC---TC 123954
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||||| || || || || || |||| ||||| ||||||||||||||
Sbjct 123953 CACCTCCAGTGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAAATCTGCAT 123903
>seq3586
Length=17470
Score = 82.4 bits (90), Expect = 7e-11
Identities = 161/231 (70%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||| ||||| || ||||||||| ||||| || || |
Sbjct 6447 CCACCACGAAGACGAAGAACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGCC 6388
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGG 41754
| || || | || |||||||| || || ||||| || || | |||||||||| | |||
Sbjct 6387 AAAGTCCGACCATCCTCGAGCTGTTTTCCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGG 6328
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTC 41811
| | || ||||||||| ||| | || || | ||| | | | ||| || || |||
Sbjct 6327 ATCCCT-TCCTTGTCC-TGAATCTTAGCCTTAAC-ATTATCAATTGTGTCT-GAGCTCTC 6272
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||||| || || || || || |||| ||||| || || || |||||
Sbjct 6271 AACCTCCAAGGTAATAGTCTTGCCTGTCAAAGTCTTCACAAAGATTTGCAT 6221
>seq2666
Length=20083
Score = 82.4 bits (90), Expect = 7e-11
Identities = 162/233 (70%), Gaps = 10/233 (4%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||| || || || || ||||| || ||||||||||| |
Sbjct 9282 CCACCACGAAGACGAAGCACAAGGTGAAGTGTTGATTCCTTTTGGATGTTATAGTCTGCA 9341
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC-GGG 41754
|| ||| | | || || || |||||||| ||||| || || | ||||||||| || ||
Sbjct 9342 AGAGTGTGACCATCTTCAAGTTGCTTGCCAGCGAAGATAAGTCTCTGTTGGTCTGCTTGG 9401
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810
| | || || |||| | ||| | || || | || | | || ||||| ||| ||
Sbjct 9402 ATCCCT-TCTTTGT-CGTGAATCTTGGCCTTGACATTGTCAACGGTGTCAGAGCT---CT 9456
Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
| || || | ||||| ||||| || || || || || || ||||||||||||
Sbjct 9457 CAACTTCTAGGGTTATGGTTTTGCCAGTTAGGGTTTTCACAAAAATCTGCATG 9509
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462258867572000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |