Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq516 116 3e-21 seq308 109 5e-19 seq275 107 2e-18 seq3586 82.4 7e-11 seq2666 82.4 7e-11 >seq516 Length=37039 Score = 116 bits (128), Expect = 3e-21 Identities = 168/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | || || || || || ||||||||||||||| || || | Sbjct 10217 GCCACCGCGAAGACGAAGGACAAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGC 10276 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGG 41753 || ||||| | || ||||||||||||||||||||||| || | |||||||| | || Sbjct 10277 AAGAGTGCGACCATCTTCGAGCTGCTTGCCGGCGAATATGAGTCTTTGTTGGTCTGGTGG 10336 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGAC--TC 41811 || | || |||||||| ||| || |||| || | || | || || | || Sbjct 10337 GATCCCT-TCCTTGTCTTGGATCTTGGCCTTC-ACATTGTCA-ATGGTATCTGAGCTTTC 10393 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| ||||| |||||||| || || ||||| ||||| |||||||| Sbjct 10394 AACCTCCAAAGTTATGGTTTTACCGGTAAGGGTCTTGACGAATATCTGCAT 10444 >seq308 Length=205501 Score = 109 bits (120), Expect = 5e-19 Identities = 168/233 (72%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || | |||||| | |||| ||||| || ||||||||| ||||| || || | Sbjct 130708 GCCACCTCTTAGACGAAGGACCAAGTGCAGGGTTGACTCCTTCTGGATGTTGTAATCAGC 130767 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGG 41753 || || || | || || ||||| || || ||||| || || | |||||||||| | || Sbjct 130768 AAGAGTTCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGG 130827 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGAC 41809 || | || |||||||| ||||||| |||| || | | || ||||| ||| | Sbjct 130828 GATCCCT-TCCTTGTCTTGGATTTTTGTCTTC-ACATTGTCGACTGTGTCCGAGCT---C 130882 Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| |||| ||||| ||||| || || || ||||| || ||||||||||| Sbjct 130883 TCCACTTCCAAAGTTATGGTTTTTCCGGTAAGGGTCTTAACAAAAATCTGCAT 130935 Score = 109 bits (120), Expect = 5e-19 Identities = 157/215 (73%), Gaps = 10/215 (5%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||| ||||| || || ||||||||||||||| || || | || ||||| | || || Sbjct 130954 CACAAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGCAAGTGTGCGACCATCTTC 131013 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGGAACGCTCTCCTTGTCCA 41771 ||||||||||||||||||||| || | ||||||||| | | || | || ||||||| | Sbjct 131014 GAGCTGCTTGCCGGCGAATATGAGTCTCTGTTGGTCTGGTGAGATCCCT-TCCTTGT-CT 131071 Query 41772 TGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATC 41827 || | || || | || | | || || || ||| || ||||||| ||||| Sbjct 131072 TGGATCTTGGCCTTTACATTGTCAACGGTATCTGAGCT---TTCAACCTCCAAAGTTATG 131128 Query 41828 GTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || || ||||| ||||| |||||||| Sbjct 131129 GTTTTACCGGTAAGGGTCTTGACGAATATCTGCAT 131163 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || || || || || ||| || || ||||| ||||| | Sbjct 130481 CCACCGCGGAGACGGAGAACAAGGTGAAGAGTCGACTCTTTTTGGATGTTGTAGTCTGCA 130540 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC-GGG 41754 || || || | || || |||||||| || || || || || | ||||||||| | ||| Sbjct 130541 AGAGTACGACCATCCTCAAGCTGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGTGGG 130600 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810 | | || || ||||| ||| | ||||| | || | |||||||| |||| | Sbjct 130601 ATCCCT-TCTTTGTCT-TGAATCTTTGCCTTCACATTATCTACAGTGTCTGAGCTC---T 130655 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | ||||||| ||||| ||||| || || || ||||| || |||||||||||| Sbjct 130656 CAACCTCCAAAGTTATGGTTTTTCCGGTTAGGGTCTTGACAAAAATCTGCATG 130708 >seq275 Length=143682 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||| || |||| ||| || || ||||||||| ||||| ||||| | Sbjct 139554 CCACCACGTAGACGCAAGACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAGTCAGCC 139495 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || |||| || || ||||| |||||||| |||| | ||| ||||||| || Sbjct 139494 AAAGTACGGCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGG 139435 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| |||||| |||| ||| | | | ||||| |||||| Sbjct 139434 ATTCCCTCCTTGTCTTGGATTTTA-GCTTTCACGTTGTCGATGGTGTCAGAACTCTCCAC 139376 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || |||| ||||| ||||| || ||||| Sbjct 139375 CTCCAAAGTGATAGTCTTTCCGGTCAAGGTCTTAACGAAGATTTGCAT 139328 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || |||| || || || |||||||||||| || || |||| Sbjct 123444 CCTCCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGAATATTGTAATCGGCC 123385 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || | || || |||||||| |||||||| |||| | ||| ||||||| || Sbjct 123384 AAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGG 123325 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||| |||| | || | || |||| ||| | | | |||||| |||||| Sbjct 123324 ATACCCTCTTTGT-CTTGGATCTTGGCTTTCACGTTGTCAATGGTGTCGGAGCTCTCCAC 123266 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || ||||| |||| ||||| ||||| |||||||| Sbjct 123265 CTCGAGGGTAATGGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 123218 Score = 100 bits (110), Expect = 3e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||||||| ||||| ||||| | Sbjct 124129 CCACCACGGAGACGGAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCA 124070 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || |||||||| || ||||| || || ||||| || |||| || Sbjct 124069 AGTGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGG 124010 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTC---GCTCGACTC 41811 | || ||||||||| ||| || ||| | | | | | ||||| |||| || Sbjct 124009 ATGCCTTCCTTGTCCTGGATCTTGGCCTTAACATTATCA-ATGGTGTCTGAGCTC---TC 123954 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || || || || || |||| ||||| |||||||||||||| Sbjct 123953 CACCTCCAGTGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAAATCTGCAT 123903 >seq3586 Length=17470 Score = 82.4 bits (90), Expect = 7e-11 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||||| || ||||||||| ||||| || || | Sbjct 6447 CCACCACGAAGACGAAGAACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGCC 6388 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGG 41754 | || || | || |||||||| || || ||||| || || | |||||||||| | ||| Sbjct 6387 AAAGTCCGACCATCCTCGAGCTGTTTTCCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGG 6328 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTC 41811 | | || ||||||||| ||| | || || | ||| | | | ||| || || ||| Sbjct 6327 ATCCCT-TCCTTGTCC-TGAATCTTAGCCTTAAC-ATTATCAATTGTGTCT-GAGCTCTC 6272 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || || || || || |||| ||||| || || || ||||| Sbjct 6271 AACCTCCAAGGTAATAGTCTTGCCTGTCAAAGTCTTCACAAAGATTTGCAT 6221 >seq2666 Length=20083 Score = 82.4 bits (90), Expect = 7e-11 Identities = 162/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| || || || || ||||| || ||||||||||| | Sbjct 9282 CCACCACGAAGACGAAGCACAAGGTGAAGTGTTGATTCCTTTTGGATGTTATAGTCTGCA 9341 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC-GGG 41754 || ||| | | || || || |||||||| ||||| || || | ||||||||| || || Sbjct 9342 AGAGTGTGACCATCTTCAAGTTGCTTGCCAGCGAAGATAAGTCTCTGTTGGTCTGCTTGG 9401 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810 | | || || |||| | ||| | || || | || | | || ||||| ||| || Sbjct 9402 ATCCCT-TCTTTGT-CGTGAATCTTGGCCTTGACATTGTCAACGGTGTCAGAGCT---CT 9456 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || || | ||||| ||||| || || || || || || |||||||||||| Sbjct 9457 CAACTTCTAGGGTTATGGTTTTGCCAGTTAGGGTTTTCACAAAAATCTGCATG 9509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462258867572000