Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq22 102 2e-16 seq99 100 6e-16 seq3 100 6e-16 seq433 98.7 2e-15 seq170 98.7 2e-15 seq145 98.7 2e-15 seq96 98.7 2e-15 seq58 98.7 2e-15 seq25 98.7 2e-15 seq1 98.7 2e-15 seq127 87.8 4e-12 >seq22 Length=40393389 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||||||||||||||| |||||||||| || || |||| || |||||||||||||||| Sbjct 12662776 TTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 12662835 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 12662836 GCCCCACGGTGGGC 12662849 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1462955 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1463014 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1463015 CCCACGGTGGGC 1463026 >seq99 Length=1167601 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 479303 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 479244 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 479243 CCCCACGGTGGGC 479231 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 478455 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 478396 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 478395 CCCACGGTGGGC 478384 >seq3 Length=4817789 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 3084120 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3084061 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 3084060 CCCCACGGTGGGC 3084048 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 3109258 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3109199 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 3109198 CCCCACGGTGGGC 3109186 >seq433 Length=43824 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 4679 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4620 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4619 CCCACGGTGGGC 4608 >seq170 Length=38796167 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 32413721 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 32413662 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 32413661 CCCACGGTGGGC 32413650 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 32414226 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 32414167 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 32414166 CCCACGGTGGGC 32414155 >seq145 Length=44152522 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 35957612 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 35957553 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 35957552 CCCACGGTGGGC 35957541 >seq96 Length=52461754 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 5448653 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5448594 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5448593 CCCACGGTGGGC 5448582 >seq58 Length=2649046 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1002206 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1002147 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1002146 CCCACGGTGGGC 1002135 >seq25 Length=215421 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 7417 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7476 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 7477 CCCACGGTGGGC 7488 >seq1 Length=34941034 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1728304 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1728363 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1728364 CCCACGGTGGGC 1728375 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1787640 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1787699 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1787700 CCCACGGTGGGC 1787711 >seq127 Length=60962716 Score = 87.8 bits (96), Expect = 4e-12 Identities = 168/245 (69%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 230394 AGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATT-G 230452 ||| |||||||||| || | ||| || | ||||| || ||| | ||| || || | | Sbjct 5746875 AGATGCAGTTGAAATTGAGAGGGAATTTGTGTGTGATGC-ATTGCCTGTTGCTTTGGTAG 5746817 Query 230453 GCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTG 230512 | |||||| ||| | ||| | ||||| || || || || || || | | || | || Sbjct 5746816 GGATGAACTGTGAGTTGATGAGTCAGTATATTGAGTTTGTTGCTGATAGATTGTTGGCTG 5746757 Query 230513 CACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTT 230572 | ||||||| | ||| | ||| | ||| || |||| | |||||| | |||| Sbjct 5746756 CGCTTGGTTGTGGGAAGATTTACGGCGTGTCGAATCCGTTTGATTGGATGGAGTTGATTT 5746697 Query 230573 CGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTG 230632 | |||||||||||||| || ||||| || ||| | || | || ||||||| | || || Sbjct 5746696 CTCTTCAAGGGAAGACTAATTTCTTTGAGAAGAGAGTTGGGGAGTATCAGAAGGCTTCTG 5746637 Query 230633 TGATG 230637 | ||| Sbjct 5746636 TTATG 5746632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057278531070980