Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq127 122 9e-23 >seq127 Length=60962716 Score = 122 bits (134), Expect = 9e-23 Identities = 369/565 (65%), Gaps = 9/565 (2%) Strand=Plus/Plus Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 ||| || ||| || || || ||||| ||||||||||||| ||| | ||| || |||| Sbjct 5746928 ACAATAAACAAGCAAAATCACAATGAAGTCCTTCGTCTCGAGAGATCAATTCATTCGAAA 5746987 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCC 16312 | ||||| || |||||| || || ||||| | ||| || || | |||| || || Sbjct 5746988 ACGTTAAACCCGGCATTAGCCCACGCTTCTTAAGCCAAAAAAT-GGAGCAGAAACTTCCT 5747046 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCT 16372 || |||||||| || |||| | | ||||| || |||| | || || | | || Sbjct 5747047 GAGAAGAATATCCCTTCAATACAAGCAAACGCAATTATCCTCTCTGCAAATGATTCAGAC 5747106 Query 16373 TTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCT 16432 || |||||| || || |||| || || || | ||| | ||| || ||||| Sbjct 5747107 CCAT---CAATCCACCTCAGTGCCCAATCAGCCTTCTTTTTCACACAGGGCACGGTTTCG 5747163 Query 16433 ATGGCCTTAAACAATTTCTCTTTTT--CCTGAATATCGATTATATACGTATCAATCAGTA 16490 || || ||| | | ||||| ||| ||| | || || || || | || | Sbjct 5747164 ATTGCTCGAAAGAGGTGAGATTTTTGGGATGA--ATCCTTAATGTAAGTTTCTAAAAGGA 5747221 Query 16491 AACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAG 16550 ||||||||| || || ||||| || ||||| || ||||| || || || || | Sbjct 5747222 GTGAGTACATTTCAGAATGAATGTTTTCAATGGCGATTTGAAAACCGTAAAATGCGCGCG 5747281 Query 16551 CCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGT 16610 | || || | ||| || || ||| || | || || || || |||||| || | Sbjct 5747282 CTTCAGCGACTTGCACCTCTTTCATAAACCGACCTGCGAGATTTTCCAGCACGATTCCAT 5747341 Query 16611 CACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAA 16670 | ||| || || || || | | ||| ||||||||| ||| ||||| || || || Sbjct 5747342 CTGATGCGGCGAAGAAGGCGAGAACGTGTGTAATGAAATGTTTCTCGTCGGAAGTTAGGG 5747401 Query 16671 TATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCA 16730 | | ||| | |||||| |||| ||| |||||||| | ||||||||| || Sbjct 5747402 TTTCCCAGTGACCTAAATCGGATGATAGATCGACTTCTTCAGCCGTCCAAAACGATGCTT 5747461 Query 16731 CTGCCTTTTTATACATTTTCCAAAT 16755 | || ||||| ||||||| ||| || Sbjct 5747462 CGGCTTTTTTGTACATTTCCCAGAT 5747486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511157120200720