Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq127 233 2e-56 >seq127 Length=60962716 Score = 233 bits (258), Expect = 2e-56 Identities = 418/602 (69%), Gaps = 10/602 (2%) Strand=Plus/Plus Query 24132 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 24191 ||||| || ||||| || || || || ||||||| | || ||||| || |||||||| Sbjct 5746933 AAACAAGCAAAATCACAATGAAGTCCTTCGTCTCGAGAGATCAATTCATTCGAAAACGTT 5746992 Query 24192 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAA 24250 | || |||||||| |||||||| ||||||||||| ||||| ||| || ||| || || Sbjct 5746993 AAACCCGGCATTAGCCCACGCTTCTTAAGCCAAAAAATGGA-GCAGAAACTTCCTGAGAA 5747051 Query 24251 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATG 24310 ||| || ||||| | ||||| ||||| | || ||| || | | ||| Sbjct 5747052 GAATATCCCTTCAATACAAGCAAACGCAATTATCCTCTCTGCAAATGATTCAGACCCATC 5747111 Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 |||||| | | |||||||| ||||||||||| ||||| |||| || || || || Sbjct 5747112 AATCCACCTCAGTGCCCAATCAGCCTTCTTTTTCACACAGGGCACGGTTTCGATTGCTCG 5747171 Query 24371 AAAGAGAT-AG-tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACT--AT 24426 |||||| | || ||||| || | ||| |||| || || || | ||| || | | Sbjct 5747172 AAAGAGGTGAGATTTTTGGGATGA--ATCCTTAATGTAAGTTTC--TAAAAGGAGTGAGT 5747227 Query 24427 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486 ||||||| |||||||||||||||||||| |||||||| ||||| || | || || | Sbjct 5747228 ACATTTCAGAATGAATGTTTTCAATGGCGATTTGAAAACCGTAAAATGCGCGCGCTTCAG 5747287 Query 24487 TAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 24546 | || || ||| | ||| || |||| | |||||| ||| ||||| || | Sbjct 5747288 CGACTTGCACCTCTTTCATAAACCGACCTGCGAGATTTTCCAGCACGATTCCATCTGATG 5747347 Query 24547 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 24606 | || || || || | || ||| | || |||| ||| ||||| | ||||| | | || Sbjct 5747348 CGGCGAAGAAGGCGAGAACGTGTGTAATGAAATGTTTCTCGTCGGAAGTTAGGGTTTCCC 5747407 Query 24607 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 | | | | ||| |||| ||| |||||||| | |||||||| ||||| || || | Sbjct 5747408 AGTGACCTAAATCGGATGATAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGCTT 5747467 Query 24667 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGAT 24726 |||| ||||| | |||||| | | |||| |||||| || ||| ||| ||| ||| | Sbjct 5747468 TTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATTTATCTGGGT 5747527 Query 24727 TT 24728 || Sbjct 5747528 TT 5747529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593422913506080