Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 1e-14 seq58 82.4 7e-11 >seq1 Length=34941034 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || |||| || | || ||||| ||||| ||| || ||| | || Sbjct 3649564 ATGCAGATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCCTTGAGGTCGAAAGCTCA 3649623 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || ||||| ||||||| | ||||| || ||| | || ||| || Sbjct 3649624 GACACTATTGACAATGTTAAGACAAAAATTACTGATAAGGAGGGTATCCCACCAGACCAG 3649683 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| ||||||||||| || || ||| |||||||| ||| | || |||||||| Sbjct 3649684 CAAAGGCTTATCTTTGCCGGAAAGCAATTGGAAGATGGTCGGACTCTAGCAGATTACAAC 3649743 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || ||||| || || || ||| |||| | || ||| | || || Sbjct 3649744 ATCCAAAAGGAGTCCACCCTCCACTTGGTTCTCCGCTTAAGGGGTGG 3649790 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || |||||| | || |||||| || ||||| |||||||| || || || |||| Sbjct 3650569 GACAAGGAAGGTATCCCTCCAGATCAGCAGAGACTCATCTTTGCTGGGAAGCAGTTGGAG 3650628 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||| |||| |||| |||||||||||||||||||| || || |||||| Sbjct 3650629 GATGGGCGAACTCTGGCAGATTACAATATTCAGAAGGAGTCGACCCTTCAC 3650679 >seq58 Length=2649046 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || |||| |||||||| ||||| || || ||| || ||| | Sbjct 1147155 ATGCAGATTTTTGTCAAGACATTGACTGGCAAGACTATCACCTTGGAGGTGGAGAGTTCC 1147214 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| ||||| ||||| |||||| | ||| |||||| Sbjct 1147215 GATACTATCGACAATGTCAAGGCGAAAATCCAGGATAAGGAAGGTATTCCCCCAGATCAG 1147274 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | ||||| || || || || || || ||| | ||| |||| || ||||| Sbjct 1147275 CAGAGGTTGATCTTCGCTGGTAAGCAGCTTGAGGATGGAAGGACTTTGGCTGACTACAAC 1147334 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATT 29179 || |||||||| ||||||||||| ||||| | || || Sbjct 1147335 ATCCAGAAGGAGTCTACTCTTCATTTGGTGCTTCGTTT 1147372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428125901995130