Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1 129 5e-25 seq157 96.9 3e-15 seq58 86.0 5e-12 >seq1 Length=34941034 Score = 129 bits (142), Expect = 5e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || | ||| |||| ||||| || || |||||||||||||||||||| || Sbjct 3650474 CCACCTCTGAGACGGAGGACCAAGTGCAAGGTTGATTCCTTTTGAATGTTATAGTCAGCT 3650415 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||||||||| || ||||| | || |||||||||||||| | || Sbjct 3650414 AGAGTCCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGTCTCTGCTGGTCAGCTGGA 3650355 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCT--CCG 21126 | || |||||||| | ||||||| ||||| | | | | |||||| || ||| | Sbjct 3650354 ATTCCCTCCTTGTCTGTGATCTTTGCCTTCACATTGTCAATAGTATC--CGAGCTTTCAA 3650297 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| | || ||||||||||| || | || || || || || ||||| Sbjct 3650296 CTTCAAGTGTGATGGTCTTGCCAGTGAGAGTCTTCACGAAGATCTGCAT 3650248 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||||||||||||||||| || ||||| || || |||| || | | ||| Sbjct 3650231 AGAACCAGGTGCAAAGTGGACTCCTTCTGGATGTTGTAATCAGCCAATGTCCTGCCATCC 3650172 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || |||||||| || ||| | || |||||||| ||||| | || | |||||||||||| Sbjct 3650171 TCAAGCTGTTTACCGGCAAAGATGAGTCTCTGTTGGTCAGCTGGAATGCCTTCCTTGTCT 3650112 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 | ||||| ||||| | | | | ||||| | || ||||| || |||||| Sbjct 3650111 GTAATCTTCGCCTTCACATTGTCAATGGTATCTGAGCTTTCAACTTCCAGTGTGATGGTC 3650052 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || ||||| || ||||| Sbjct 3650051 TTGCCAGTAAGAGTCTTCACAAAGATCTGCAT 3650020 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| ||||||||||||||||| || || ||||| || |||| || | | ||| Sbjct 3650003 AGCACCAGGTGCAAAGTGGACTCCTTCTGGATATTATAATCGGCCAATGTCCTGCCATCC 3649944 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || |||||||| || ||| | || || ||||||||||| || | ||||||||||| Sbjct 3649943 TCAAGCTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCC 3649884 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| || || | | | ||| ||| ||| ||||| ||| | ||| Sbjct 3649883 TGAATCTTAGTCTTGACGTTCTCAATAGTGTCAGAACTCTCAACTTCCAAGGTTACTGTC 3649824 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | ||||| ||||| || ||||| Sbjct 3649823 TTGCCTGTGAGGGTTTTAACAAAGATCTGCAT 3649792 >seq157 Length=426068 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||| | || | || |||||||| || ||||| || || ||| Sbjct 398739 CCACCACGCAGGCGGAGCACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCTGCC 398680 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | ||||||| ||||| || || ||| | ||||| || |||||||| || Sbjct 398679 AATGTACGACCGTCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTTTGCTGGTCTGGTGGG 398620 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC-CGT 21127 | || |||||||| |||||| ||||| | | | | ||||| || |||| || Sbjct 398619 ATACCCTCCTTGTCTTGTATCTTTGCCTTCACATTGTCAATTGTATC--CGAGCTCTCGA 398562 Query 21128 T-TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||||||||||| || || | || ||||| || |||||||| Sbjct 398561 CCTCCAAAGTAATGGTCTTTCCTGTGAGAGTCTTGACGAAAATTTGCAT 398513 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || || | ||| | || || ||||| ||||||||||| || || Sbjct 398967 CCACCACGCAGACGAAGAACAAGATGAAGGGTTGATTCCTTCTGAATGTTATAATCAGCG 398908 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || |||| ||| || || ||| |||| || |||||||| || || Sbjct 398907 AGGGTACGACCATCTTCCAACTGCTTACCGGCAAAAATCAGCCTCTGCTGATCTGGAGGG 398848 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| |||||| | | | |||||| | |||| Sbjct 398847 ATCCCTTCCTTGTCCTGTATCTTTGTTTTCACATTATCAATAGTATCCGAGCTCTCCACC 398788 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || || ||||| || || | || || || || || ||||| Sbjct 398787 TCCAGAGTGATCGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 398741 >seq58 Length=2649046 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | || ||||||||||| || || || ||||| || || | ||| Sbjct 1147594 AGCACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAATCCGCAAGAGTCCTCCCATCC 1147535 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| || || ||| |||| | ||||||||||| ||| | || ||||| || Sbjct 1147534 TCAAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTATCC 1147475 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||| || || | | ||| || || | ||| |||| || |||||| Sbjct 1147474 TGGATCTTTGCCTTGACATTGTCGATCGTGTCCGAGCTCTCAACCTCCAAAGTGATGGTC 1147415 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || ||||| || || || ||||| || ||||| Sbjct 1147414 TTCCCGGTCAAGGTCTTCACAAAAATCTGCAT 1147383 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| || | ||| | ||| ||||||||||| ||||| ||||| || || ||| || |||| Sbjct 1146683 GAGGACAAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGCGAGAGTTCGGCCGTC 1146624 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 || || ||||| || ||| | || | | || || || || | ||||||||||| Sbjct 1146623 TTCAAGTTGTTTTCCGGCAAAGATTAAACGTTGTTGATCTGGAGGAATTCCTTCCTTGTC 1146564 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 ||||||| || || | | ||| || || ||| || | || ||||| Sbjct 1146563 TTGGATCTTTGCCTTTACGTTGTCGATGGTGTCGGAACTCTCAACCTCGAGAGTTATGGT 1146504 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||||||| | ||||| || || |||||||| Sbjct 1146503 CTTGCCGGTAAGGGTTTTCACGAAGATTTGCAT 1146471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422052082654136