Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq146 98.7 8e-16 seq1 98.7 8e-16 >seq146 Length=1334862 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || ||| | ||||| | || || |||||||| ||| ||| |||| | | Sbjct 1119868 AATGCAGATTTTCGTGAAAACCCTAACTGGAAAAACCATAACCCTAGAAGTGGAATCTTC 1119927 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | | | || ||| || || |||||||| | || |||||| Sbjct 1119928 CGATACAATCGACAACGTGAAAACAAAGATCCAAGACAAAGAAGGAATTCCACCAGATCA 1119987 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||| | || || || || || ||||||||||||||| | |||| | || |||||||| Sbjct 1119988 ACAACGCCTGATTTTCGCCGGAAAACAATTGGAAGATGGAAGAACTCTCGCAGATTACAA 1120047 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||||| || ||||| || |||||| ||||| || Sbjct 1120048 CATTCAGAAAGAATCAACGCTTCACTTGGTGCTA 1120081 >seq1 Length=34941034 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || |||| || | || ||||| ||||| ||| || ||| | || Sbjct 3649564 ATGCAGATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCCTTGAGGTCGAAAGCTCA 3649623 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | ||| ||||||| | ||||| || ||| | || ||| || Sbjct 3649624 GACACTATTGACAATGTTAAGACAAAAATTACTGATAAGGAGGGTATCCCACCAGACCAG 3649683 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| ||||||||||| || || |||||||||||| ||| | || |||||||| Sbjct 3649684 CAAAGGCTTATCTTTGCCGGAAAGCAATTGGAAGATGGTCGGACTCTAGCAGATTACAAC 3649743 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || |||||||| || || || ||| |||| | || ||| | || || Sbjct 3649744 ATCCAAAAGGAGTCCACCCTCCACTTGGTTCTCCGCTTAAGGGGTGG 3649790 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || |||||| | || |||||| || ||||| |||||||| || || || ||||| Sbjct 3650569 GACAAGGAAGGTATCCCTCCAGATCAGCAGAGACTCATCTTTGCTGGGAAGCAGTTGGAG 3650628 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||| |||| |||| |||||||||||||| ||||| || || |||||| Sbjct 3650629 GATGGGCGAACTCTGGCAGATTACAATATTCAGAAGGAGTCGACCCTTCAC 3650679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410595304939844