Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq58 125 7e-24 seq57 120 3e-22 seq157 95.1 1e-14 seq1 95.1 1e-14 >seq58 Length=2649046 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| || |||||| | || |||||| || Sbjct 1146699 ATGCAGATCTTCGTCAAGACTCTTACTGGCAAGACAATCACCCTTGAAGTCGAAAGTTCC 1146758 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| |||| | ||||||| ||||| || ||||| || | ||||| Sbjct 1146759 GATACTATCGACAACG-TCAAAGCCAAAATTCAAGACAAGGAAGGCATTCCACCAGACCA 1146817 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| | || |||| ||| || || ||||| || |||| ||| |||||| ||| ||||| Sbjct 1146818 GCAAAGGCTGATCTTCGCTGGAAAGCAGCTCGAAGACGGGCGAACCCTCGCCGATTACAA 1146877 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| | || || || || ||| | || | ||||| || Sbjct 1146878 TATCCAGAAGGAGTCAACTCTCCACCTTGTGCTCCGTCTTAGGGGTGG 1146925 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| || || ||||| ||||| || |||| || || || Sbjct 1146471 ATGCAAATCTTCGTGAAAACCCTTACCGGCAAGACCATAACTCTCGAGGTTGAGAGTTCC 1146530 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| ||| || | ||||| || || || || | || || Sbjct 1146531 GACACCATCGACAACG-TAAAGGCAAAGATCCAAGACAAGGAAGGAATTCCTCCAGATCA 1146589 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | |||| || || ||||| || || |||| || || ||| ||||||||| Sbjct 1146590 ACAACGTTTAATCTTTGCCGGAAAACAACTTGAAGACGGCCGAACTCTCGCCGACTACAA 1146649 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||| |||||| | || || ||||| || | || || || || || Sbjct 1146650 CATCCAAAAGGAGTCAACTCTCCATCTTGTCCTCCGTTTAAGAGGAGG 1146697 >seq57 Length=33024243 Score = 120 bits (132), Expect = 3e-22 Identities = 169/236 (72%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 40682 TCCGAAAA-ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTC 40740 || ||||| ||||| || ||||| ||||| || ||||| |||||||| ||| | || ||| Sbjct 18658467 TCAGAAAAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTC 18658408 Query 40741 GAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCC 40800 ||| || |||||| | | | | | || | ||| || | |||||||| ||||| || Sbjct 18658407 GAATCCTCCGACACCATCGACAATGTGAAAGCAAAGATCCAAGACAAAGAAGGCATTCCA 18658348 Query 40801 GCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC 40860 | ||||| ||||| || || | ||| || ||||| || || || | ||||| || Sbjct 18658347 CCAGACCAACAACGTCTGATTTTCGCCGGAAAACAACTTGAAGATGGTCGCACACTTGCT 18658288 Query 40861 GACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || |||||||||||||| ||| | || || || || || | || |||| || || Sbjct 18658287 GATTACAACATCCAGAAAGAGTCGACTCTTCACCTTGTTCTTCGTCTGAGAGGTGG 18658232 >seq157 Length=426068 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || ||||| || | || ||||| | | Sbjct 398513 ATGCAAATTTTCGTCAAGACTCTCACAGGAAAGACCATTACTTTGGAGGTCGAGAGCTCG 398572 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| ||| || | ||||| ||||| ||||| | |||||| Sbjct 398573 GATACAATTGACAATGTGAAGGCAAAGATACAAGACAAGGAGGGTATCCCACCAGACCAG 398632 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| | || |||| || || || ||||| || |||| || || | || |||||| Sbjct 398633 CAAAGGCTTATCTTTGCTGGAAAGCAGCTCGAGGACGGTCGTACATTGGCAGATTACAAC 398692 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| | || || || || ||| | ||| || | || || Sbjct 398693 ATCCAGAAGGAGTCTACCCTTCACCTTGTGCTCCGCCTGCGTGGTGG 398739 >seq1 Length=34941034 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || |||||| | | Sbjct 3649564 ATGCAGATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCCTTGAGGTCGAAAGCTCA 3649623 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||| ||||||| || || ||||| ||||| | |||||| Sbjct 3649624 GACACTATTGACAATGTTAAGACAAAAATTACTGATAAGGAGGGTATCCCACCAGACCAG 3649683 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| | || |||| || || || || |||| || | || || || || |||||| Sbjct 3649684 CAAAGGCTTATCTTTGCCGGAAAGCAATTGGAAGATGGTCGGACTCTAGCAGATTACAAC 3649743 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| |||||| |||| || || | || | ||||| ||||| || Sbjct 3649744 ATCCAAAAGGAGTCCACCCTCCACTTGGTTCTCCGCTTAAGGGGTGG 3649790 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| |||||||| | || || ||| | | Sbjct 3650020 ATGCAGATCTTTGTGAAGACTCTTACTGGCAAGACCATCACACTGGAAGTTGAAAGCTCA 3650079 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || ||| ||||| || ||||| || || ||||| Sbjct 3650080 GATACCATTGACAATGTGAAGGCGAAGATTACAGACAAGGAAGGCATTCCAGCTGACCAA 3650139 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||||||||| || || |||||||| || || | | || | || |||||| Sbjct 3650140 CAGAGACTCATCTTTGCCGGTAAACAGCTTGAGGATGGCAGGACATTGGCTGATTACAAC 3650199 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| |||| || || | || |||||||| || Sbjct 3650200 ATCCAGAAGGAGTCCACTTTGCACCTGGTTCTTCGTTTGAGGGGAGG 3650246 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| ||||| ||||| || | ||| | || || || | Sbjct 3649792 ATGCAGATCTTTGTTAAAACCCTCACAGGCAAGACAGTAACCTTGGAAGTTGAGAGTTCT 3649851 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| || |||| ||||| || || ||||| | ||||| Sbjct 3649852 GACACTATTGAGAACG-TCAAGACTAAGATTCAGGACAAGGAAGGAATCCCACCAGACCA 3649910 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| || || |||||||| || || | | || | ||| || || Sbjct 3649911 GCAGAGGCTCATCTTTGCCGGTAAACAGCTTGAGGATGGCAGGACATTGGCCGATTATAA 3649970 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| |||| || ||| | || |||||||| ||| Sbjct 3649971 TATCCAGAAGGAGTCCACTTTGCACCTGGTGCTTCGTTTGAGGGGAGGC 3650019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514960006100960