Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq146 131 3e-25 seq1 129 9e-25 seq157 127 3e-24 seq145 98.7 1e-15 >seq146 Length=1334862 Score = 131 bits (144), Expect = 3e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | || || ||||| || ||||| ||||| |||| | ||| | Sbjct 1119868 AATGCAGATTTTCGTGAAAACCCTAACTGGAAAAACCATAACCCTAGAAGTGGAATCTTC 1119927 Query 124598 TGATACAATTTCTAATTT-AAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||||| || | |||||| || || ||||| |||||||| || ||||| |||| Sbjct 1119928 CGATACAATCGACAACGTGAAAACA-AAGATCCAAGACAAAGAAGGAATTCCACCAGATC 1119986 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 ||||| | || ||||| || ||||||||||| || ||| | |||| | | |||||| | Sbjct 1119987 AACAACGCCTGATTTTCGCCGGAAAACAATTGGAAGATGGAAGAACTCTCGCAGATTACA 1120046 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTA 124767 | ||||| ||||||||||| | || ||||| || | | || ||||||| Sbjct 1120047 ACATTCAGAAAGAATCAACGCTTCACTTGGTGCTAAGGCTTCGTGGTGGTA 1120097 >seq1 Length=34941034 Score = 129 bits (142), Expect = 9e-25 Identities = 171/232 (74%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAAA 124597 ||||| || ||| | ||||| || || ||||| || || || | ||| | ||| || | Sbjct 3649564 ATGCAGATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCCTTGAGGTCGAAAGCTCA 3649623 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || || ||| ||| |||| ||| |||||| ||||| || ||||| ||||| || | Sbjct 3649624 -GACACTATTGACAATGTTAAGACA-AAAATTACTGATAAGGAGGGTATCCCACCAGACC 3649681 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | ||||||||||| ||||| ||||| ||||| || ||| |||| || ||| |||||| | Sbjct 3649682 AGCAAAGGCTTATCTTTGCCGGAAAGCAATTGGAAGATGGTCGGACTCTAGCAGATTACA 3649741 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || ||||| || || || | || |||||| | || ||| | |||||||| Sbjct 3649742 ACATCCAAAAGGAGTCCACCCTCCACTTGGTTCTCCGCTTAAGGGGTGGTAT 3649793 Score = 91.5 bits (100), Expect = 2e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || |||||||| || |||| | || |||| | Sbjct 3649792 ATGCAGATCTTTGTTAAAACCCTCACAGGCAAGACAGTAACCTTGGAAGTTGAGAGTTCT 3649851 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | || || ||||| || || ||||| || ||||| || || Sbjct 3649852 GACACTATTGAGAACGTCAAGACTAAGATTCAGGACAAGGAAGGAATCCCACCAGACCAG 3649911 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| || ||||| | |||||| | | ||||| | ||||||||| Sbjct 3649912 CAGAGGCTCATCTTTGCCGGTAAACAGCTTGAGGATGGCAGGACATTGGCCGATTATAAT 3649971 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTT 124756 || || || || || |||||||| |||| | ||||| Sbjct 3649972 ATCCAGAAGGAGTCCACTTTGCACCTGGTGCTTCGTTT 3650009 >seq157 Length=426068 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || |||||||| || || || || | ||| ||||| | Sbjct 398057 ATGCAAATCTTTGTCAAAACCCTAACAGGGAAGACCATTACCCTTGAGGTTGAAAGCTCT 398116 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||||||||||| || ||||| || ||||| || ||| Sbjct 398117 GACACCATTGACAATGTTAAGGCTAAAATTCAAGACAAGGAAGGGATTCCACCAGACCAA 398176 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| ||||||||| | |||||| |||| || ||| ||||||||| Sbjct 398177 CAGAGGCTGATCTTTGCTGGAAAACAACTCGAGGATGGTCGTACTCTAGCTGATTATAAT 398236 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || || | || ||||| | || | || ||||| || Sbjct 398237 ATCCAGAAGGAGTCTACCCTCCACCTGGTTCTCCGCCTTCGTGGTGGGAT 398286 Score = 102 bits (112), Expect = 1e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| || | ||||| || ||||| || || || ||| | ||| | || ||| Sbjct 398513 ATGCAAATTTTCGTCAAGACTCTCACAGGAAAGACCATTACTTTGGAGGTCGAGAGCTCG 398572 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| | || || || ||||| || || ||||| ||||| || || Sbjct 398573 -GATACAATTGACAATGTGAAGGCAAAGATACAAGACAAGGAGGGTATCCCACCAGACCA 398631 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||||||| ||||| ||||| || | ||||| |||| ||||| | |||||| || Sbjct 398632 GCAAAGGCTTATCTTTGCTGGAAAGCAGCTCGAGGACGGTCGTACATTGGCAGATTACAA 398691 Query 124718 TATTCAAAAAGAATCAAC 124735 || || || || || || Sbjct 398692 CATCCAGAAGGAGTCTAC 398709 >seq145 Length=44152522 Score = 98.7 bits (108), Expect = 1e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || |||||||||||||| || ||||| | |||||| | || ||||| || |||||| Sbjct 33200632 AAGATCCAAGATAAAGAAGGCATTCCACCACACCAACAACGTCTGATTTTCGCCGGAAAA 33200691 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||| | || ||| |||| ||| | | ||||| || || || ||||| |||||| | || Sbjct 33200692 CAACTTGAAGATGGTCGCACACTTGCTGATTACAACATCCAGAAAGAGTCAACTCTTCAC 33200751 Query 124743 TTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774 | ||| | ||| | |||||||| ||| || Sbjct 33200752 CTTGTTCTCCGTCTCAGAGGTGGTGCTAAGAA 33200783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755075948972800