Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1 125 6e-24 seq157 122 8e-23 seq58 113 4e-20 seq57 104 2e-17 seq146 89.7 4e-13 >seq1 Length=34941034 Score = 125 bits (138), Expect = 6e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-GCTCATAGTGCGCGTATCCTC 118588 |||||||||| || ||||| ||||| ||||||||||| ||| | ||| || ||| || Sbjct 3649772 ACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCTGCT-AGAGTCCGACCATCTTC 3649714 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | || ||||| || |||| || | ||||| || || || || |||||||| || || Sbjct 3649713 CAATTGCTTTCCGGCAAAGATAAGCCTTTGCTGGTCTGGTGGGATACCCTCCTTATCAGT 3649654 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||||| ||||| | || | ||||| | ||| |||||||| | ||| | || || Sbjct 3649653 AATTTTTGTCTTAACATTGTCAATAGTGTCTGAGCTTTCGACCTCAAGGGTGATGGTCTT 3649594 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| || || || || ||||| ||||||||| Sbjct 3649593 GCCAGTAAGGGTCTTGACAAAGATCTGCATG 3649563 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-GCTCATAGTGCGCGTATCCTC 118588 |||||||| | || || || ||||||||||| || || ||| | ||| || |||||| Sbjct 3650456 ACCAAGTGCAAGGTTGATTCCTTTTGAATGTTATAGTCAGCT-AGAGTCCGGCCATCCTC 3650398 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || ||| ||||||| | |||||| || | || || |||||||||||||| Sbjct 3650397 CAGCTGCTTCCCCGCGAAGATGAGTCTCTGCTGGTCAGCTGGAATTCCCTCCTTGTCTGT 3650338 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| || || | || | || |||| ||| || || || | || | || || Sbjct 3650337 GATCTTTGCCTTCACATTGTCAATAGTATCCGAGCTTTCAACTTCAAGTGTGATGGTCTT 3650278 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || ||||| || || || |||||||| Sbjct 3650277 GCCAGTGAGAGTCTTCACGAAGATCTGCAT 3650248 Score = 109 bits (120), Expect = 5e-19 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-GCTCATAGTGCGCGTATCCTC 118588 ||||| || | || || || ||||| |||||||| || ||| | || | |||||| Sbjct 3649544 ACCAAATGAAGAGTTGATTCCTTTTGGATGTTGTAGTCTGCTAAC-GTCCTTCCATCCTC 3649486 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTG 118647 || ||||| ||||| |||| || | ||||||||| || || || |||||||||| ||| Sbjct 3649485 CAGTTGTTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGTGGAATCCCCTCCTTGTCCTG 3649426 Query 118648 TAATTTTTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 | | || || || || | |||| ||||| | ||||||||| |||| || | || Sbjct 3649425 GA--TCTTGGTCTTGACATTATCGATTGTGTCTGAGCTCTCGACTTCGAGAGTAATAGTC 3649368 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| |||||||| ||||| || ||||| Sbjct 3649367 TTTCCGGTGAGAGTTTTCACAAAGATTTGCAT 3649336 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || ||||||||||| || || | |||||| Sbjct 3650228 ACCAGGTGCAAAGTGGACTCCTTCTGGATGTTGTAATCAGCCAATGTCCTGCCATCCTCA 3650169 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || || ||||||| | ||| || || | || ||||| |||||||||||| Sbjct 3650168 AGCTGTTTACCGGCAAAGATGAGTCTCTGTTGGTCAGCTGGAATGCCTTCCTTGTCTGTA 3650109 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | ||| || | ||| || || || | || | || ||| Sbjct 3650108 ATCTTCGCCTTCACATTGTCAATGGTATCTGAGCTTTCAACTTCCAGTGTGATGGTCTTG 3650049 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || || ||||| || ||||| ||||||||| || Sbjct 3650048 CCAGTAAGAGTCTTCACAAAGATCTGCATGCCT 3650016 >seq157 Length=426068 Score = 122 bits (134), Expect = 8e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-GCTCATAGTGCGCGTATCCTC 118588 |||| ||||| |||||||| || || || || ||||| ||| | ||| || |||||| Sbjct 398265 ACCAGGTGGAGGGTAGACTCCTTCTGGATATTATAATCAGCT-AGAGTACGACCATCCTC 398207 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||| ||||||||||| |||| || | ||| || || || || || || ||||||||| Sbjct 398206 GAGTTGTTTTCCAGCAAAGATCAGCCTCTGTTGGTCTGGTGGAATCCCTTCCTTGTCTTG 398147 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||||| ||||| | || | |||||| | ||| || ||||| | ||| | || || Sbjct 398146 AATTTTAGCCTTAACATTGTCAATGGTGTCAGAGCTTTCAACCTCAAGGGTAATGGTCTT 398087 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || ||||| ||||| || |||||| Sbjct 398086 CCCTGTTAGGGTTTTGACAAAGATTTGCATG 398056 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | |||||||| || || ||||||||||| || || || ||||| Sbjct 398722 CACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCTGCCAATGTACGACCGTCCTC 398663 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| |||||||| |||| || | ||||| || || || || |||||||||||| Sbjct 398662 GAGCTGCTTTCCAGCAAAGATAAGCCTTTGCTGGTCTGGTGGGATACCCTCCTTGTCTTG 398603 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| || || | || | || |||| |||||||||||| | || | || || Sbjct 398602 TATCTTTGCCTTCACATTGTCAATTGTATCCGAGCTCTCGACCTCCAAAGTAATGGTCTT 398543 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || ||||| || || ||||| ||||| Sbjct 398542 TCCTGTGAGAGTCTTGACGAAAATTTGCAT 398513 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || ||||| |||||||| | || || ||| ||||| || || || Sbjct 398025 GTTGACTCCTTCTGAATATTGTAATCAGCAAGGGTTCGGCCATCTTCGAGTTGCTTACCG 397966 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| ||||| ||||| || ||||| ||||||||||||||| ||| ||| ||| Sbjct 397965 GCAAAGATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGAATCTTTGCCTTA 397906 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | || || | ||||| ||||||| || | ||| || || |||| || Sbjct 397905 ACATTGTCAATTGTATCAGAACTCTCCACCTCGAGAGTGATCGTCTTACCAGTCAAGGTC 397846 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| || ||||| Sbjct 397845 TTAACAAAGATTTGCAT 397829 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || |||||||| ||||| | || || ||| || | ||| || || Sbjct 398937 GTTGATTCCTTCTGAATGTTATAATCAGCGAGGGTACGACCATCTTCCAACTGCTTACCG 398878 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC-TGTAATTTTTTGTTT 118660 || | || || | ||||||||| ||||| || || |||||||| |||| ||| | ||| Sbjct 398877 GCAAAAATCAGCCTCTGCTGATCTGGAGGGATCCCTTCCTTGTCCTGTATCTTTGT-TTT 398819 Query 118661 AACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | || | || |||| |||||| ||||| | || | ||| || || || ||||| Sbjct 398818 CACATTATCAATAGTATCCGAGCTCTCCACCTCCAGAGTGATCGTCTTTCCAGTGAGAGT 398759 Query 118721 TTTTACAAAAATCTGCAT 118738 || || ||||||||||| Sbjct 398758 CTTCACGAAAATCTGCAT 398741 >seq58 Length=2649046 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | |||||||| ||||| || |||||||| | ||| | | |||||| Sbjct 1147592 CACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAATCCGCAAGAGTCCTCCCATCCTC 1147533 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || ||||| | || | | |||||| || || || || |||||||| || Sbjct 1147532 AAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTATCCTG 1147473 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| || || | |||| ||||||| |||||| ||||| | || | || || Sbjct 1147472 GATCTTTGCCTTGACATTGTCGATCGTGTCCGAGCTCTCAACCTCCAAAGTGATGGTCTT 1147413 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| || || |||||||||||||| Sbjct 1147412 CCCGGTCAAGGTCTTCACAAAAATCTGCAT 1147383 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| || | |||||||| || || |||||||| || || ||| | |||||| Sbjct 1147364 CACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTCCTTCCATCCTC 1147305 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || |||||| |||| | | ||||||||| || || || || ||||| || Sbjct 1147304 AAGCTGCTTACCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTATCCTG 1147245 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| || || | |||| || || | ||||| ||||| | ||| | || || Sbjct 1147244 GATTTTCGCCTTGACATTGTCGATAGTATCGGAACTCTCCACCTCCAAGGTGATAGTCTT 1147185 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||| || || |||||||||||||| Sbjct 1147184 GCCAGTCAATGTCTTGACAAAAATCTGCAT 1147155 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || |||||||||||||| || ||| || |||||| || || |||||| Sbjct 1147807 GTGGACTCCTTCTGAATGTTGTAATCAGCCAAAGTACGTCCATCCTCAAGTTGCTTTCCA 1147748 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | |||||| || || || || |||||||| || ||| || || Sbjct 1147747 GCAAAGATCAACCTCTGCTGGTCAGGTGGAATACCCTCCTTATCCTGAATCTTGGCCTTC 1147688 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||||||| ||| || ||||| | || | ||||| || |||| || Sbjct 1147687 ACATTATCAATCGTGTCCGAGCTTTCAACCTCCAAAGTGATGGTTTTCCCAGTCAAGGTC 1147628 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 1147627 TTAACAAAGATCTGCAT 1147611 >seq57 Length=33024243 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| || ||||||||||| | ||||| ||| || || |||||||| Sbjct 18658262 GTCGACTCTTTCTGGATGTTGTAATCAGCAAGTGTGCGACCATCTTCAAGTTGTTTTCCG 18658321 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || ||||| || || || || || ||||| || |||||| || ||| ||| Sbjct 18658322 GCGAAAATCAGACGTTGTTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATCTTTGCTTTC 18658381 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| | | ||||| || | ||| | ||||| || || || ||| Sbjct 18658382 ACATTGTCGATGGTGTCGGAGGATTCGACTTCTAGGGTTATGGTTTTACCCGTTAGGGTT 18658441 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 18658442 TTCACGAAGATCTGCAT 18658458 >seq146 Length=1334862 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || | ||||||||| | || || ||||| |||||||||||||| Sbjct 1120097 TACCACCACGAAGCCTTAGCACCAAGTGAAGCGTTGATTCTTTCTGAATGTTGTAATCTG 1120038 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| | ||| || | |||||||| ||| | || || || || ||||| || | Sbjct 1120037 CGAGAGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAAATCAGGCGTTGTTGATCTGGTG 1119978 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || |||||| || ||| ||| || | |||| || || | || | Sbjct 1119977 GAATTCCTTCTTTGTCTTGGATCTTTGTTTTCACGTTGTCGATTGTATCGGAAGATTCCA 1119918 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| | ||||| || || || ||||| || ||||||||||| Sbjct 1119917 CTTCTAGGGTTATGGTTTTTCCAGTTAGGGTTTTCACGAAAATCTGCAT 1119869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433617607002232