Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1 118 1e-21 seq58 116 4e-21 seq157 95.1 1e-14 seq57 84.2 2e-11 seq172 82.4 9e-11 seq145 82.4 9e-11 >seq1 Length=34941034 Score = 118 bits (130), Expect = 1e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||| | ||||| ||||| || ||||||||||| || || ||||| Sbjct 3650474 CCACCTCTGAGACGGAGGACCAAGTGCAAGGTTGATTCCTTTTGAATGTTATAGTCAGCT 3650415 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 |||||||| | || || |||||||| || ||||| ||||||| ||||||||| || || Sbjct 3650414 AGAGTCCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGTCTCTGCTGGTCAGCTGGA 3650355 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | | ||||||||| |||| ||| || | | | | || || ||| ||| Sbjct 3650354 ATTCCCTCCTTGTCTGTGATCTTTGCCTTCACATTGTCAATAGTATCCGAGCT---TTCA 3650298 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | |||||||| ||||| || || ||||| || ||||| ||||| Sbjct 3650297 ACTTCAAGTGTGATGGTCTTGCCAGTGAGAGTCTTCACGAAGATCTGCAT 3650248 Score = 105 bits (116), Expect = 8e-18 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || ||||| | |||| ||||| ||| |||||| || || |||||||||||| Sbjct 3650246 CCTCCCCTCAAACGAAGAACCAGGTGCAAAGTGGACTCCTTCTGGATGTTGTAATCAGCC 3650187 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | |||| | || || ||||| ||||| || || ||||||| ||| ||||| || || Sbjct 3650186 AATGTCCTGCCATCCTCAAGCTGTTTACCGGCAAAGATGAGTCTCTGTTGGTCAGCTGGA 3650127 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | || |||||||| | || || || | | | | || || ||| ||| Sbjct 3650126 ATGCCTTCCTTGTCTGTAATCTTCGCCTTCACATTGTCAATGGTATCTGAGCT---TTCA 3650070 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | |||||||| ||||| || || ||||| |||||||| ||||| Sbjct 3650069 ACTTCCAGTGTGATGGTCTTGCCAGTAAGAGTCTTCACAAAGATCTGCAT 3650020 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| |||||||||||||| |||||||| ||| | || || | |||||| ||||| || Sbjct 3650667 CTCCTTCTGAATATTGTAATCTGCCAGAGTTCGCCCATCCTCCAACTGCTTCCCAGCAAA 3650608 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 43110 ||||||| |||||| || | || | | ||||||||| ||| | || || || | Sbjct 3650607 GATGAGTCTCTGCTGATCTGGAGGGATACCTTCCTTGTCC-TGAATCTTGGTCTTCACAT 3650549 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | || || ||| ||||| || | ||||| || || || || || |||| Sbjct 3650548 TATCAATTGTATCAGAACTC---TCCACCTCAAGGGTGATAGTCTTCCCAGTGAGGGTCT 3650492 Query 43168 TTACAAAGATTTGCAT 43183 | |||||||| ||||| Sbjct 3650491 TCACAAAGATCTGCAT 3650476 >seq58 Length=2649046 Score = 116 bits (128), Expect = 4e-21 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| || ||||| | |||||| || | || ||||||||| ||||||||||| || Sbjct 1147610 TCCTCCCCTCAAACGAAGCACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAATCCGC 1147551 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||||| | | || || |||||||||||||| || || | | ||||||||| | || Sbjct 1147550 AAGAGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGG 1147491 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 43132 | | |||||| ||| ||| ||| |||| | | | |||||| |||| || Sbjct 1147490 AATACCCTCCTTATCCTGGATCTTTGCCTTGACATTGTCGATCGTGTCCGAGCTC---TC 1147434 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | |||||||| || || || | ||||| ||||| || ||||| Sbjct 1147433 AACCTCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTCACAAAAATCTGCAT 1147383 Score = 104 bits (114), Expect = 3e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || ||||| | |||||||| | ||| ||||| || ||||||||||||||| Sbjct 1147153 CCTCCCCTCAAACGGAGAACCAAATGAAGGGTGGATTCCTTCTGGATATTGTAATCAGCC 1147094 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| || | || || |||||||||||||| || || | | ||||||||| | || Sbjct 1147093 AAAGTACGGCCATCTTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGAGGA 1147034 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 43132 | | ||||||||| ||| | || | | | | | | | | ||| || ||| ||| Sbjct 1147033 ATACCTTCCTTGTCC-TGAATCTTAGCCTTAACATTGTCGATCGTATCCGAGCT---TTC 1146978 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | || || || || || || || ||||| |||||||||||||| Sbjct 1146977 AACTTCCAAAGTAATCGTCTTCCCGGTGAGAGTCTTCACAAAGATTTGCAT 1146927 Score = 102 bits (112), Expect = 9e-17 Identities = 142/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || ||||||||||| || || || ||| |||| || |||||||| |||||||| Sbjct 1146890 CTCCTTCTGGATATTGTAATCGGCGAGGGTTCGCCCGTCTTCGAGCTGCTTTCCAGCGAA 1146831 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || | |||||||| | || | || ||||||| | ||| |||| | ||||| || Sbjct 1146830 GATCAGCCTTTGCTGGTCTGGTGGAATGCCTTCCTTGT-CTTGAATTTTGGCTTTGA-CG 1146773 Query 43111 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | | | || ||| ||| || || | ||||| || ||||| || || ||||| Sbjct 1146772 TTGTCGATAGTATCGGAACTTTCGACTTCAAGGGTGATTGTCTTGCCAGTAAGAGTCTTG 1146713 Query 43170 ACAAAGATTTGCAT 43183 || ||||| ||||| Sbjct 1146712 ACGAAGATCTGCAT 1146699 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || ||||| | ||||||||| | || |||||| || || ||||| |||||| Sbjct 1147381 CCACCCCTCAAACGAAGCACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCC 1147322 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||||| | || || ||||||||||||||||| || | | |||||| || | || Sbjct 1147321 AAAGTCCTTCCATCCTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGATCTGGGGGA 1147262 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCG---CTCGATTCC 43133 | | ||||| ||| |||||| |||| | | | || ||| ||| ||| Sbjct 1147261 ATACCTTCCTTATCCTGGATTTTCGCCTTGACATTGTCGATAGTATCGGAACTC---TCC 1147205 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||| || ||||| || | ||||| ||||| || ||||| Sbjct 1147204 ACCTCCAAGGTGATAGTCTTGCCAGTCAATGTCTTGACAAAAATCTGCAT 1147155 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/197 (71%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||||||||||| ||| || | || || || ||||| ||||| || Sbjct 1147802 CTCCTTCTGAATGTTGTAATCAGCCAAAGTACGTCCATCCTCAAGTTGCTTTCCAGCAAA 1147743 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || | | ||||||||| | || | | |||||| ||| ||| | || | || | Sbjct 1147742 GATCAACCTCTGCTGGTCAGGTGGAATACCCTCCTTATCC-TGAATCTTGGCCTTCACAT 1147684 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | |||||| ||| ||| || || | ||||||||||| || || | |||| Sbjct 1147683 TATCAATCGTGTCCGAGCT---TTCAACCTCCAAAGTGATGGTTTTCCCAGTCAAGGTCT 1147627 Query 43168 TTACAAAGATTTGCATT 43184 | |||||||| |||||| Sbjct 1147626 TAACAAAGATCTGCATT 1147610 >seq157 Length=426068 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||||||||||||||| || || || | || || || |||||||| || || Sbjct 398020 CTCCTTCTGAATATTGTAATCAGCAAGGGTTCGGCCATCTTCGAGTTGCTTACCGGCAAA 397961 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || || |||||||| | || | || |||||||| | ||| | |||| | | | | Sbjct 397960 GATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGT-CTTGAATCTTTGCCTTAACAT 397902 Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | || || ||| ||||| |||| ||||| || || || || | |||| Sbjct 397901 TGTCAATTGTATCAGAACTC---TCCACCTCGAGAGTGATCGTCTTACCAGTCAAGGTCT 397845 Query 43168 TTACAAAGATTTGCAT 43183 | |||||||||||||| Sbjct 397844 TAACAAAGATTTGCAT 397829 >seq57 Length=33024243 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || ||||||||||| || || || | || || || || || || ||||| Sbjct 18658267 CTCTTTCTGGATGTTGTAATCAGCAAGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAA 18658326 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || || || ||||| | || | || || ||||| ||| ||| ||| | | Sbjct 18658327 AATCAGACGTTGTTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATCTTTGCTTTCACATT 18658386 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| ||||| || || | || |||||||| |||||||| || || || Sbjct 18658387 GTCGATGGTGTCGGAGGATTCGACTTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCAC 18658446 Query 43172 AAAGATTTGCATTTTT 43187 ||||| ||||| ||| Sbjct 18658447 GAAGATCTGCATCTTT 18658462 >seq172 Length=448232 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| ||| || || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 221670 AAAAATATTCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 221729 Query 60117 TCACCACTATACTAC 60131 | ||||||||||||| Sbjct 221730 TTACCACTATACTAC 221744 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| |||||| || || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 236568 AAACATTTTCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 236627 Query 60117 TCACCACTATACTAC 60131 | ||||||||||||| Sbjct 236628 TTACCACTATACTAC 236642 >seq145 Length=44152522 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||| || || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 34973705 AAAAAATTTCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 34973646 Query 60117 TCACCACTATACTAC 60131 | ||||||||||||| Sbjct 34973645 TTACCACTATACTAC 34973631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571529932860880