Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1 116 2e-21 seq57 86.0 4e-12 seq58 84.2 1e-11 seq157 82.4 5e-11 >seq1 Length=34941034 Score = 116 bits (128), Expect = 2e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| || || ||| || || ||||| ||||| | || ||| | || Sbjct 3650459 AGGACCAAGTGCAAGGTTGATTCCTTTTGAATGTTATAGTCAGCTAGAGTCCGGCCATCC 3650400 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || ||||| ||||| | ||||||||| | || | | ||||||||| Sbjct 3650399 TCCAGCTGCTTCCCCGCGAAGATGAGTCTCTGCTGGTCAGCTGGAATTCCCTCCTTGTCT 3650340 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 | |||||| ||| | || | | || | ||| | ||| || || | |||||||| Sbjct 3650339 GTGATCTTTGCCTTCACATTGTCAATAGTATCCGAGCTTTCAACTTCAAGTGTGATGGTC 3650280 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 ||||| |||||||| ||||| |||||||||||| ||| Sbjct 3650279 TTGCCAGTGAGAGTCTTCACGAAGATCTGCATCCCTC 3650243 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| ||||| || ||||| |||||||| || | || | | | || Sbjct 3650231 AGAACCAGGTGCAAAGTGGACTCCTTCTGGATGTTGTAATCAGCCAATGTCCTGCCATCC 3650172 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| || || || || ||||| | ||| ||||| | || | || |||||||| Sbjct 3650171 TCAAGCTGTTTACCGGCAAAGATGAGTCTCTGTTGGTCAGCTGGAATGCCTTCCTTGTCT 3650112 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 | ||||| ||| | || | | || | ||| | ||| || |||| |||||||| Sbjct 3650111 GTAATCTTCGCCTTCACATTGTCAATGGTATCTGAGCTTTCAACTTCCAGTGTGATGGTC 3650052 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || ||||| ||||||||||||||||| Sbjct 3650051 TTGCCAGTAAGAGTCTTCACAAAGATCTGCAT 3650020 >seq57 Length=33024243 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| |||||||| |||||||| || | || || | || Sbjct 18658247 AGAACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAATCAGCAAGTGTGCGACCATCT 18658306 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | || || || |||||||| || || || ||||| || | || || ||||| Sbjct 18658307 TCAAGTTGTTTTCCGGCGAAAATCAGACGTTGTTGGTCTGGTGGAATGCCTTCTTTGTCT 18658366 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 |||||| ||||| | || | | || | |||| |||||||| || | || ||||| Sbjct 18658367 TGGATCTTT-GCTTTCACATTGTCGATGGTGTCGGAGGATTCGACTTCTAGGGTTATGGT 18658425 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||| || || || |||||||| |||||||||||| Sbjct 18658426 TTTACCCGTTAGGGTTTTCACGAAGATCTGCATC 18658459 >seq58 Length=2649046 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | ||| || ||||| || ||||| |||| || || |||| Sbjct 1146910 AGCACAAGGTGGAGAGTTGACTCCTTCTGGATATTGTAATCGGCGAGGGTTCGCCCGTCT 1146851 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| || |||| |||||||| || | || |||||||| Sbjct 1146850 TCGAGCTGCTTTCCAGCGAAGATCAGCCTTTGCTGGTCTGGTGGAATGCCTTCCTTGTCT 1146791 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || ||| ||||| | | | | || | ||||| |||||| || | ||||| || Sbjct 1146790 TGAAT-TTTGGCTTTGACGTTGTCGATAGTATCGGAACTTTCGACTTCAAGGGTGATTGT 1146732 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || ||||| || || ||||||||||| Sbjct 1146731 CTTGCCAGTAAGAGTCTTGACGAAGATCTGCAT 1146699 >seq157 Length=426068 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||| || || | || ||| | || ||||||||||| || || || Sbjct 398932 TTCCTTCTGAATGTTATAATCAGCGAGGGTACGACCATCTTCCAACTGCTTACCGGCAAA 398873 Query 34258 AATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGAT 34316 ||| |||| |||||| || | ||| | || |||||||| ||||||| || | || Sbjct 398872 AATCAGCCTCTGCTGATCTGGAGGGATCCCT-TCCTTGTCCTGTATCTTTGTTTTCACAT 398814 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | ||| | || || |||| ||||| || || || |||||||| |||| Sbjct 398813 TATCAATAGTATCCGAGCTCTCCACCTCCAGAGTGATCGTCTTTCCAGTGAGAGTCTTCA 398754 Query 34377 CAAAGATCTGCATC 34390 | || ||||||||| Sbjct 398753 CGAAAATCTGCATC 398740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322913533789760