Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq127 179 3e-40 >seq127 Length=60962716 Score = 179 bits (198), Expect = 3e-40 Identities = 582/893 (65%), Gaps = 23/893 (3%) Strand=Plus/Plus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 |||||||| || || ||||| || | ||||||||| ||||||||||| || || ||| Sbjct 5746630 GACATAACAGAAGCCTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 5746689 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048 | | ||||| ||||| ||||||| ||||| | || || | || Sbjct 5746690 TGAAGAGAAATCAACTCCATCCAATCAAACGGATTCGACACGCCGTAAATCTTCCCACAA 5746749 Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108 || | | ||| |||||||| || ||||| || |||||||| |||| || |||||| Sbjct 5746750 CCAAGCGCAGCCAACAATCTATCAGCAACAAACTCAATATACTGACTCATCAACTCACAG 5746809 Query 16109 TTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACC 16168 ||||| |||| || |||||| | ||| || | ||| | | || || | ||| Sbjct 5746810 TTCATCCCTACCAAAGCAACAGGCAATGCATCACACACAAATTCCCTCTCAATTTCAACT 5746869 Query 16169 GCTTCAATGATTATATCT----CTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTT 16224 || || | | ||| | ||| || | | ||| | || || || | Sbjct 5746870 GCATCTTTCACTATCCCCTGCACTTTCTCCTC-ATTCGGCTTCTTCTTCAACAA---TCC 5746925 Query 16225 AAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGA 16284 | ||| || |||||||||||||||||| | ||||||||| | | || || || || || Sbjct 5746926 ATACAATAAACAAGCAAAATCACAATGAAGTCCTTCGTCTCGAGAGATCAATTCATTCGA 5746985 Query 16285 AAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATAT--AGCGGCAAATGAA 16342 ||| || | ||| |||||||| || || || |||| |||||| || ||| | || | Sbjct 5746986 AAACGTTAAACCCGGCATTAGCCCACGCTTCTTAAGCCAAAAAATGGAGCAGAAACT--T 5747043 Query 16343 CCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTA 16402 || || |||||||| ||||||| ||||| |||| ||| ||| | | | | | Sbjct 5747044 CCTGAGAAGAATATCCCTTCAATACAAGCAAACGCAA-TTATC-CTCTCTGCAAAT--GA 5747099 Query 16403 ttttta-ctttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTT 16461 || | | || ||||| | ||||||| || || | ||| |||||| || | | Sbjct 5747100 TTCAGACCCATCAATCCACCTCAGTGCCCAATCAGCCTTCTTTTTCACACAGGGCACGGT 5747159 Query 16462 CTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAG 16521 || ||||| ||| | | | ||||| ||| ||| ||||| |||| || Sbjct 5747160 TTCGATTGCTCGAAAGAGGTGAGATTTTTGGGATGAATCCTTAATGTAAGTTTCTAAAAG 5747219 Query 16522 TAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCT 16581 | |||||||| |||||||| || || || || || |||||||| ||||| | Sbjct 5747220 GAGTGAGTACATTTCAGAATGAATGTTTTCAATGGCGATTTGAAAACCGTAAAATGCGCG 5747279 Query 16582 AGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCC 16641 ||||| | | ||| || || ||||| |||| | ||||| || ||||| Sbjct 5747280 CGCTTCAGCGACTTGCACCTCTTTCATAAACCGACCTGCGAGATTTTCCAGCACGATTCC 5747339 Query 16642 ATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAA-- 16699 ||| || || || || || || | |||| |||| |||| ||| ||| || ||| Sbjct 5747340 ATCTGATGCGGCGAAGAAGGCGAGAACGTGTGTAATGAAATGTTTCTCG---TCGGAAGT 5747396 Query 16700 -AGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGA 16758 || || ||||| | ||||| ||||| |||||| ||||| | |||||||| || Sbjct 5747397 TAGGGTTTCCCAGTGACCTAAATCGGATGATAGATCGACTTCTTCAGCCGTCCAAAACGA 5747456 Query 16759 AGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811 || | || ||||| ||||||| ||| || | | ||| |||| || |||| Sbjct 5747457 TGCTTCGGCTTTTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACA 5747509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462279321775600