Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq58 100 2e-16 seq157 96.9 3e-15 seq1 82.4 6e-11 >seq58 Length=2649046 Score = 100 bits (110), Expect = 2e-16 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || ||||| | | ||||| || || ||| |||||||| || ||||| || | Sbjct 1147153 CCTCCCCTCAAACGGAGAACCAAATGAAGGGTGGATTCCTTCTGGATATTGTAATCAGCC 1147094 Query 45170 A--GTT-GGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGA 45226 | || ||| ||| ||| || || || || || || ||||||| ||| ||||| ||| Sbjct 1147093 AAAGTACGGCCATCTTCG---AGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGA 1147037 Query 45227 GGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCC 45286 || | ||| ||||||||| ||| || |||||| | | | ||| | || Sbjct 1147036 GGAATACCTTCCTTGTCCTGAATCTTAGCCTTAACATTGTCGATCGTATCCGAGCTTTCA 1146977 Query 45287 ACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||||||||| || || ||||||||||||||||||||||| Sbjct 1146976 ACTTCCAAAGTAATCGTCTTCCCGGTGAGAGTCTTCACAAAGATTTGCAT 1146927 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||| || |||||||||||| || || |||| || |||||||||||||| || Sbjct 1146662 CTCCTTTTGGATGTTGTAGTCGGCGAGAGTTCGGCCGTCTTCAAGTTGTTTTCCGGCAAA 1146603 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || || || ||||| || ||||| | || |||||||| || ||| ||| || Sbjct 1146602 GATTAAACGTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGGATCTTTGCCTTTACGTT 1146543 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| || ||| ||||| | || || |||||||| || || || ||||| Sbjct 1146542 GTCGATGGTGTCGGAACTCTCAACCTCGAGAGTTATGGTCTTGCCGGTAAGGGTTTTCAC 1146483 Query 45325 AAAGATTTGCAT 45336 ||||||||||| Sbjct 1146482 GAAGATTTGCAT 1146471 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| ||||| | | ||||| || || || ||||||||| ||||||||||| | Sbjct 1147381 CCACCCCTCAAACGAAGCACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCC 1147322 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | | | || || || || || || ||||| ||||||| ||| || || || || Sbjct 1147321 AAAGTCCTTCCATCCTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGATCTGGGGGA 1147262 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| ||||| ||| ||||| ||| || | | | || || ||||||| Sbjct 1147261 ATACCTTCCTTATCCTGGATTTTCGCCTTGACATTGTCGATAGTATCGGAACTCTCCACC 1147202 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || |||||||| |||| ||||| ||||| || ||||| Sbjct 1147201 TCCAAGGTGATAGTCTTGCCAGTCAATGTCTTGACAAAAATCTGCAT 1147155 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||||||||||||| || || || | || || ||||| Sbjct 1147814 GTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCCAAAGTACGTCCATCCTCAAGTTG 1147755 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||| || || ||||||| ||| ||||| || || | ||||||||| ||| ||| || Sbjct 1147754 CTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGTGGAATACCCTCCTTATCCTGAATCTT 1147695 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | ||||| | || ||||||| || || || || || || Sbjct 1147694 GGCCTTCACATTATCAATCGTGTCCGAGCTTTCAACCTCCAAAGTGATGGTTTTCCCAGT 1147635 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| ||||| Sbjct 1147634 CAAGGTCTTAACAAAGATCTGCAT 1147611 >seq157 Length=426068 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAG---TTGGCGATCGTCGTCCAGTTGTTTTCCGGC 45201 |||||||||||| ||||| || || | ||| ||| ||| ||||| || ||||| Sbjct 398020 CTCCTTCTGAATATTGTAATCAGCAAGGGTTCGGCCATCTTCG---AGTTGCTTACCGGC 397964 Query 45202 GAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAAC 45261 || |||| || || ||||| ||||| | ||||||||||| ||| ||| |||||| Sbjct 397963 AAAGATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGAATCTTTGCCTTAAC 397904 Query 45262 CGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTT 45321 | | | || || ||||||||| | || |||||||| || |||| ||||| Sbjct 397903 ATTGTCAATTGTATCAGAACTCTCCACCTCGAGAGTGATCGTCTTACCAGTCAAGGTCTT 397844 Query 45322 CACAAAGATTTGCAT 45336 |||||||||||||| Sbjct 397843 AACAAAGATTTGCAT 397829 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| || || || || || ||| | || || Sbjct 398265 ACCAGGTGGAGGGTAGACTCCTTCTGGATATTATAATCAGCTAGAGTACGACCATCCTCG 398206 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||||||||| || || |||| || ||||||||| || || | || |||||||| | Sbjct 398205 AGTTGTTTTCCAGCAAAGATCAGCCTCTGTTGGTCTGGTGGAATCCCTTCCTTGTCTTGA 398146 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| |||||| | | | |||| | || ||||| | |||||| ||||| Sbjct 398145 ATTTTAGCCTTAACATTGTCAATGGTGTCAGAGCTTTCAACCTCAAGGGTAATGGTCTTC 398086 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || || || ||||||||||||||| Sbjct 398085 CCTGTTAGGGTTTTGACAAAGATTTGCATG 398056 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||| || || | ||| |||| || || || ||||| || || Sbjct 398704 CTCCTTCTGGATGTTGTAATCTGCCAATGTACGACCGTCCTCGAGCTGCTTTCCAGCAAA 398645 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | || || ||||| || || | |||||||||||| || ||| ||| || Sbjct 398644 GATAAGCCTTTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGTATCTTTGCCTTCACATT 398585 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | ||| | ||| ||||||| ||||| ||||| || || |||||||| || Sbjct 398584 GTCAATTGTATCCGAGCTCTCGACCTCCAAAGTAATGGTCTTTCCTGTGAGAGTCTTGAC 398525 Query 45325 AAAGATTTGCAT 45336 || |||||||| Sbjct 398524 GAAAATTTGCAT 398513 >seq1 Length=34941034 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || ||||| | | |||| ||||| ||| ||||||||| |||||||| || | Sbjct 3650246 CCTCCCCTCAAACGAAGAACCAGGTGCAAAGTGGACTCCTTCTGGATGTTGTAATCAGCC 3650187 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | | | | || || || ||||| ||||| || || | | ||||||||| | || Sbjct 3650186 AATGTCCTGCCATCCTCAAGCTGTTTACCGGCAAAGATGAGTCTCTGTTGGTCAGCTGGA 3650127 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || |||||||| | ||| || ||| || | | | | || | || || Sbjct 3650126 ATGCCTTCCTTGTCTGTAATCTTCGCCTTCACATTGTCAATGGTATCTGAGCTTTCAACT 3650067 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| || || |||||||| || ||||||||||||||||| |||||| Sbjct 3650066 TCCAGTGTGATGGTCTTGCCAGTAAGAGTCTTCACAAAGATCTGCATG 3650019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394881416355166