Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq127 127 2e-24 >seq127 Length=60962716 Score = 127 bits (140), Expect = 2e-24 Identities = 545/854 (64%), Gaps = 17/854 (2%) Strand=Plus/Plus Query 13913 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13972 || ||||| || | |||||| || |||||||| ||||| || |||| || || || Sbjct 5746645 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAAATCAAC 5746704 Query 13973 TCCATAAAATCAAATGGATTTGTT--GACATAAACACTTTATCACAACCTAGTTCTAATA 14030 ||||| ||||||| ||||| | | | |||| || ||||||| || | | Sbjct 5746705 TCCATCCAATCAAACGGATTCGACACGCCGTAAATC--TTCCCACAACCAAGCGCAGCCA 5746762 Query 14031 GTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 14090 |||||||| |||| ||||||||||| ||| ||| || ||||| ||||| |||| | Sbjct 5746763 ACAATCTATCAGCAACAAACTCAATATACTGACTCATCAACTCACAGTTCATCCCTACCA 5746822 Query 14091 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150 ||||| | | || | |||||| | || || || || || || | | Sbjct 5746823 AAGCAACAGGCAATGCATCACACACAAATTCCCTCTCAATTTCAACTGCATCTTTCACTA 5746882 Query 14151 TAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAA 14210 | | | | || | | || | || | | | | | |||||| |||| Sbjct 5746883 TCCCCTGCACTTTCTCCTCATTCGGCTTCTTCTTCAACAATCCATACAATAAACAAGCAA 5746942 Query 14211 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 14270 ||||||||||||| || || |||| | || | ||| || ||||| ||||| || |||| Sbjct 5746943 AATCACAATGAAGTCCTTCGTCTCGAGAGATCAATTCATTCGAAAACGTTAAACCCGGCA 5747002 Query 14271 TCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAAGAATATTCCC 14329 | | || || || || | |||||| | || ||| ||| ||| || |||||||| || Sbjct 5747003 TTAGCCCACGCTTCTTAAGCCAAAA-AATGGAGCAGAAACTTCCTGAGAAGAATATCCCT 5747061 Query 14330 TCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT--ATCC 14387 |||| ||||||||| |||| | ||| |||| || || | | || |||| Sbjct 5747062 TCAATACAAGCAAACGCAATTATCCTCTCTGCAAATGA-----TTCAGACCCATCAATCC 5747116 Query 14388 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14447 | | ||||| |||| || ||||| | | | || ||||| || || ||| | Sbjct 5747117 ACCTCAGTGCCCAATCAGCCTTCTTTTTCACACAGGGCACGGTTTCGATTGCTCGAAAGA 5747176 Query 14448 AAT--GTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTC 14505 | | | || | | | ||| |||||| || || | ||| | |||||||| Sbjct 5747177 GGTGAGATTTTTGGGATGAATCCTT--AATGTAAGTTTCTAAAAGGAGTGAGTACATTTC 5747234 Query 14506 AGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTG 14565 ||| || |||||||| || || || |||||||| ||||| | ||||| | ||| Sbjct 5747235 AGAATGAATGTTTTCAATGGCGATTTGAAAACCGTAAAATGCGCGCGCTTCAGCGACTTG 5747294 Query 14566 TACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAA 14625 |||||| ||| | | || | |||||| || || ||||| || || || Sbjct 5747295 CACCTCTTTCATAAACCGACCTGCGAGATTTTCCAGCACGATTCCATCTGATGCGGCGAA 5747354 Query 14626 AAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGC 14685 || || | | || | |||| || | || ||| || | || ||| ||| | | Sbjct 5747355 GAAGGCGAGAACGTGTGTAATGAAATGTTTCTCGTCGGAAGTTAGGGTTTCCCAGTGACC 5747414 Query 14686 TAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATA 14745 |||||| || ||||| ||||| ||| | |||||||| || | |||||||| || Sbjct 5747415 TAAATCGGATGATAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGCTTTTTTGTA 5747474 Query 14746 CATTACCCATATTT 14759 |||| |||| |||| Sbjct 5747475 CATTTCCCAGATTT 5747488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482102943987280