Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 8e-16 seq146 91.5 1e-13 >seq1 Length=34941034 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || || ||||| |||||||| || || | || || |||| Sbjct 3649775 AGAACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCTGCTAGAGTCCGACCATCT 3649716 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||||||| || || ||| ||||||| ||||| || || || | || |||||||| Sbjct 3649715 TCCAATTGCTTTCCGGCAAAGATAAGCCTTTGCTGGTCTGGTGGGATACCCTCCTTATCA 3649656 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 | ||||| | ||| || | ||| |||||| | ||| |||| ||||||| | Sbjct 3649655 GTAATTTTTGTCTTAACATTGTCAATAGTGTCTGAGCTTTCGACCTCAAGGGTGATGGTC 3649596 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || | || || ||||| || ||||| Sbjct 3649595 TTGCCAGTAAGGGTCTTGACAAAGATCTGCAT 3649564 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || | ||| |||| ||||| |||||||| ||||| ||||||||||| || Sbjct 3649562 CCACCCCTGAGACGAAGAACCAAATGAAGAGTTGATTCCTTTTGGATGTTGTAGTCTGCT 3649503 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | ||| |||| |||||| || ||| |||| || || || ||||| || Sbjct 3649502 AACGTCCTTCCATCCTCCAGTTGTTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGTGGA 3649443 Query 18219 ACGCCTTCCTTAT-CGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || ||||| | | | | ||| | |||||| | | | ||||| | |||| Sbjct 3649442 ATCCCCTCCTTGTCCTGGATCTTGGT-CTTGACATTATCGATTGTGTCTGAGCTCTCGAC 3649384 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || || | || ||||| | ||||| ||||| |||||||| Sbjct 3649383 TTCGAGAGTAATAGTCTTTCCGGTGAGAGTTTTCACAAAGATTTGCAT 3649336 >seq146 Length=1334862 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || || || |||| |||||| ||||||||||| ||||||||||| || || Sbjct 1120095 CCACCACGAAGCCTTAGCACCAAGTGAAGCGTTGATTCTTTCTGAATGTTGTAATCTGCG 1120036 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211 | ||| | | ||||||||||||||| || || | || || | ||||||||| Sbjct 1120035 AGAGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAAATCAGGCGTTGTTGATC 1119983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379157932479270