Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq127 201 1e-46 seq157 109 5e-19 seq58 107 2e-18 seq57 107 2e-18 seq1 89.7 5e-13 seq257 87.8 2e-12 seq145 87.8 2e-12 seq170 84.2 2e-11 >seq127 Length=60962716 Score = 201 bits (222), Expect = 1e-46 Identities = 409/597 (69%), Gaps = 23/597 (4%) Strand=Plus/Minus Query 57546 ATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTT 57605 ||||| || |||||||| ||| | || ||| | ||||||||||| || |||||||||||| Sbjct 5747510 ATGTTCCCAATTGAATACCCACAAATCTGGGAAATGTACAAAAAAGCCGAAGCATCGTTT 5747451 Query 57606 TGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAA 57665 ||||| | |||||||| || || || ||| | | | ||||| |||| | Sbjct 5747450 TGGACGGCTGAAGAAGTCGATCTATCATCCGATTTAGGTCACTGGGAAACCCT---AACT 5747394 Query 57666 TCTGA-GAGAA--ATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATT 57722 || || ||||| |||| |||| |||||| | || || ||||||||||| ||||| || Sbjct 5747393 TCCGACGAGAAACATTTCATTACACACGTTCTCGCCTTCTTCGCCGCATCAGATGGAATC 5747334 Query 57723 GTTAACGAGAATTT----GGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAG 57778 || || ||| | ||||| | || | | |||| |||||||| | || ||| | Sbjct 5747333 GTGCTGGAAAATCTCGCAGGTCG---GTTTATGA-AAGAGGTGCAAGTCGCTGAAGCGCG 5747278 Query 57779 ATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACT 57838 |||||||| |||||| | |||||||||||| | ||||| |||||||| || || || Sbjct 5747277 CGCATTTTACGGTTTTCAAATCGCCATTGAAAACATTCATTCTGAAATGTACTCACTCCT 5747218 Query 57839 CATCGATACGTACGTGAAGGA--CAACGACGAGAAACGTAGACTGTTCAACGCGATCGAA 57896 | || || ||| | ||||| || | | | ||| | || || || |||||| Sbjct 5747217 TTTAGAAACTTACATTAAGGATTCATC--CCAAAAATCTCACCTCTTTCGAGCAATCGAA 5747160 Query 57897 ACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACG 57956 || ||||| | |||||||| || ||| || | | ||||| | | | Sbjct 5747159 ACCGTGCCCTGTGTGAAAAAGAAGGCTGATTGGGCACTGAGGTGGATTGA---TGGGTCT 5747103 Query 57957 GCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGC 58016 | | || || |||||| |||| ||||| || | ||||| |||||||| || || Sbjct 5747102 GAATCATTTGCAGAGAGGATAATTGCGTTTGCTTGTATTGAAGGGATATTCTTCTCAGGA 5747043 Query 58017 AGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAG 58075 || || ||| | || |||||| | ||||| || || || ||||| || | |||||| Sbjct 5747042 AGTTTCTGC-TCCATTTTTTGGCTTAAGAAGCGTGGGCTAATGCCGGGTTTAACGTTTTC 5746984 Query 58076 CAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTA 58132 || || ||||| || || ||||| || || ||| ||||||||| || || |||| Sbjct 5746983 GAATGAATTGATCTCTCGAGACGAAGGACTTCATTGTGATTTTGCTTGTTTATTGTA 5746927 >seq157 Length=426068 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||||| || || || |||||||| | || || || || Sbjct 398741 ATGCAGATTTTCGTGAAGACTCTCACTGGAAAGACGATCACTCTGGAGGTGGAGAGCTCG 398800 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | | || | || ||| || ||| || |||||||||||| | || || || || Sbjct 398801 GATACTATTGATAATGTGAAAACAAAGA-TACAGGACAAGGAAGGGATCCCTCCAGATCA 398859 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || || || ||||||||||| | || | |||||||| Sbjct 398860 GCAGAGGCTGATTTTTGCCGGTAAGCAGTTGGAAGATGGTCGTACCCTCGCTGATTATAA 398919 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||||| || ||||| || |||||||| || ||| | ||| | || ||| Sbjct 398920 CATTCAGAAGGAATCAACCCTTCATCTTGTTCTTCGTCTGCGTGGTGGT 398968 >seq58 Length=2649046 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| || |||||| | || || ||| ||| Sbjct 1146699 ATGCAGATCTTCGTCAAGACTCTTACTGGCAAGACAATCACCCTTGAAGTCGAAAGTTCC 1146758 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| | |||||| | ||| |||||||||||| | || || |||||| Sbjct 1146759 GATACTATCGACAACGTCAAAGCCAAAATTCAAGACAAGGAAGGCATTCCACCAGACCAG 1146818 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || |||||||| || ||| | |||||| || | |||||| || Sbjct 1146819 CAAAGGCTGATCTTCGCTGGAAAGCAGCTCGAAGACGGGCGAACCCTCGCCGATTACAAT 1146878 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || ||||| || || || || | || ||||| |||| Sbjct 1146879 ATCCAGAAGGAGTCAACTCTCCACCTTGTGCTCCGTCTTAGGGGTGGTA 1146927 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || |||||||| || || || ||||| || | || |||||| || Sbjct 1146927 ATGCAAATCTTTGTGAAGACTCTCACCGGGAAGACGATTACTTTGGAAGTTGAAAGCTCG 1146986 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | || |||||||||||| | || || |||||| Sbjct 1146987 GATACGATCGACAATGTTAAGGCTAAGATTCAGGACAAGGAAGGTATTCCTCCAGACCAG 1147046 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || ||||| || ||| | ||||| ||| || ||||| || Sbjct 1147047 CAGAGGTTGATCTTTGCTGGTAAGCAGCTCGAAGATGGCCGTACTTTGGCTGATTACAAT 1147106 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || ||||| || |||||| |||| || | ||||||| |||| Sbjct 1147107 ATCCAGAAGGAATCCACCCTTCATTTGGTTCTCCGTTTGAGGGGAGGTA 1147155 >seq57 Length=33024243 Score = 107 bits (118), Expect = 2e-18 Identities = 172/244 (70%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || ||||| || || || || || ||||| || ||| | || || ||| | Sbjct 18658462 AAAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATC 18658403 Query 31249 GTCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 ||||||| |||| | || ||| || ||| | ||||| |||||| | || || | Sbjct 18658402 CTCCGACACCATCGACAATGTGAAAGCAAAGA-TCCAAGACAAAGAAGGCATTCCACCAG 18658344 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||| || ||||| || ||||| || ||||| | ||||| | || | |||| Sbjct 18658343 ACCAACAACGTCTGATTTTCGCCGGAAAACAACTTGAAGATGGTCGCACACTTGCTGATT 18658284 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGA 31423 | ||||| || ||||| ||||||||||| || || ||| | ||||| || ||| ||| Sbjct 18658283 ACAACATCCAGAAAGAGTCGACTCTTCACCTTGTTCTTCGTCTGAGAGGTGGTGCTAAGA 18658224 Query 31424 AGCG 31427 |||| Sbjct 18658223 AGCG 18658220 >seq1 Length=34941034 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || || |||||||| || | ||| | || ||||| || Sbjct 3649792 ATGCAGATCTTTGTTAAAACCCTCACAGGCAAGACAGTAACCTTGGAAGTTGAGAGTTCT 3649851 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | || | ||||| || ||| | |||||||||||| | || || ||||| Sbjct 3649852 GACACTATTGAGAACGTCAAGACTAAGATTCA-GGACAAGGAAGGAATCCCACCAGACCA 3649910 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || || |||||| | || || | ||| || ||||||||| Sbjct 3649911 GCAGAGGCTCATCTTTGCCGGTAAACAGCTTGAGGATGGCAGGACATTGGCCGATTATAA 3649970 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || || ||| | || ||||| ||| | ||||||| || Sbjct 3649971 TATCCAGAAGGAGTCCACTTTGCACCTGGTGCTTCGTTTGAGGGGAGG 3650018 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| || ||||| | || |||||| || Sbjct 3650248 ATGCAGATCTTCGTGAAGACTCTCACTGGCAAGACCATCACACTTGAAGTTGAAAGCTCG 3650307 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | | || | || || || ||| | | |||||||| || | || | ||||| Sbjct 3650308 GATACTATTGACAATGTGAAGGCAAAGATCA-CAGACAAGGAGGGAATTCCAGCTGACCA 3650366 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATA 31370 |||| | || || ||||| || || ||| |||| || |||| | ||| || |||| Sbjct 3650367 GCAGAGACTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGGACTCT-AGCTGACTATA 3650425 Query 31371 ACATTCAAAAAGAATCGAC 31389 |||||||||| ||||| || Sbjct 3650426 ACATTCAAAAGGAATCAAC 3650444 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || |||||||| || ||||| || ||||| | || |||||| || Sbjct 3650019 CATGCAGATCTTTGTGAAGACTCTTACTGGCAAGACCATCACACTGGAAGTTGAAAGCTC 3650078 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | || || || || | |||||||||||| | || | ||||| Sbjct 3650079 AGATACCATTGACAATGTGAAGGCGAAGATTACAGACAAGGAAGGCATTCCAGCTGACCA 3650138 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | || || || || || |||||| | || || | ||| || ||||| || Sbjct 3650139 ACAGAGACTCATCTTTGCCGGTAAACAGCTTGAGGATGGCAGGACATTGGCTGATTACAA 3650198 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || ||| | || ||||| ||| | ||||||| || Sbjct 3650199 CATCCAGAAGGAGTCCACTTTGCACCTGGTTCTTCGTTTGAGGGGAGG 3650246 >seq257 Length=328955 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 31223 AAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGA-AACGGTCAAACAGAGAAT 31281 || |||||||| | || ||||| || || | | | || || | | ||||| ||| | Sbjct 268629 AAGACGATCACTCTGGAGGTTGAGAGCTCGGATACTATTGATAATGTTAAAACAAAGA-T 268687 Query 31282 AGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTT 31341 | |||||||||||| | || || || |||||| | || || || || || || ||||| Sbjct 268688 ACAGGACAAGGAAGGGATCCCTCCAGATCAGCAGAGGCTGATTTTTGCCGGTAAGCAGTT 268747 Query 31342 GGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||||| | || | ||||||||||||||| || ||||| || |||||||| || Sbjct 268748 GGAAGATGGTCGTACCCTTGCCGATTATAACATTCAGAAGGAATCAACCCTTCATCTTGT 268807 Query 31402 ACTTAGACTG 31411 ||| | ||| Sbjct 268808 TCTTCGTCTG 268817 >seq145 Length=44152522 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 31223 AAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGA-AACGGTCAAACAGAGAAT 31281 || |||||||| | || ||||| || || | | | || || | | ||||| ||| | Sbjct 18651339 AAGACGATCACTCTGGAGGTTGAGAGCTCGGATACTATTGATAATGTTAAAACAAAGA-T 18651281 Query 31282 AGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTT 31341 | |||||||||||| | || || || |||||| | || || || || || || ||||| Sbjct 18651280 ACAGGACAAGGAAGGGATCCCTCCAGATCAGCAGAGGCTGATTTTTGCCGGTAAGCAGTT 18651221 Query 31342 GGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||||| | || | ||||||||||||||| || ||||| || |||||||| || Sbjct 18651220 GGAAGATGGTCGTACCCTTGCCGATTATAACATTCAGAAGGAATCAACCCTTCATCTTGT 18651161 Query 31402 ACTTAGACTG 31411 ||| | ||| Sbjct 18651160 TCTTCGTCTG 18651151 >seq170 Length=38796167 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/217 (70%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 31186 ATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA 31245 |||||| ||||| |||||||| || || | || | ||||| || ||| | || || || Sbjct 3261370 ATCAAA-ATGCAGATTTTCGTGAAAACCGTAACTAGAAAAACCATAACCCTAGAAGTCGA 3261312 Query 31246 ACCGTCCGACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGC 31304 | | | ||| | |||| |||| ||||| ||| | ||||||||||| | | | Sbjct 3261311 ATCTTTCGATATAATCGACAACGTGAAAACAAAGA-TCCAAGACAAGGAAGGAATTTCAC 3261253 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCG 31364 | || || || || || || ||||| | ||||| |||||||| | ||| | | Sbjct 3261252 CAGATCAACAACGCCTGATTTTCGCCAGAAAACAATTGGAAGATGGAAGAACTCTCGTAG 3261193 Query 31365 ATTATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||| |||||||| ||||||| || |||||| |||| Sbjct 3261192 ATTACAACATTCAGAAAGAATTGAAGCTTCATTTGGT 3261156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445542146068320