Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq127 262 5e-65 >seq127 Length=60962716 Score = 262 bits (290), Expect = 5e-65 Identities = 427/609 (70%), Gaps = 8/609 (1%) Strand=Plus/Plus Query 33579 AAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTG 33638 ||||| || ||||| || || || || ||||||| | || ||||| || |||||||| Sbjct 5746933 AAACAAGCAAAATCACAATGAAGTCCTTCGTCTCGAGAGATCAATTCATTCGAAAACGTT 5746992 Query 33639 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAG 33698 | || |||||||| |||||||| ||||||||||| ||||| ||| ||| || ||| Sbjct 5746993 AAACCCGGCATTAGCCCACGCTTCTTAAGCCAAAAAATGGAGCAGAAACTTCCTGAGAAG 5747052 Query 33699 AAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT 33758 || || ||||| | |||||| ||||| | |||||| || | | ||| Sbjct 5747053 AATATCCCTTCAATACAAGCAAACGCAATTATCCTCTCTGCAAATGATTCAGACCCATCA 5747112 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 |||||| | | |||||||| ||||||||||| ||||| |||| ||||| || || | Sbjct 5747113 ATCCACCTCAGTGCCCAATCAGCCTTCTTTTTCACACAGGGCACGGTTTCGATTGCTCGA 5747172 Query 33819 AAGAGAT-AGtttttttC-ATTACTATCTTTAACATAAGTATCGATCAAAAGACTA--TA 33874 ||||| | || ||||| || | ||| |||| ||||| || | ||| || | || Sbjct 5747173 AAGAGGTGAGATTTTTGGGATGA--ATCCTTAATGTAAGTTTCTA--AAAGGAGTGAGTA 5747228 Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934 |||||| |||||||||||||||||||| || ||||| ||||| || | || || | Sbjct 5747229 CATTTCAGAATGAATGTTTTCAATGGCGATTTGAAAACCGTAAAATGCGCGCGCTTCAGC 5747288 Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994 | ||||| ||| | ||| || |||| | |||||| ||| |||||||| || Sbjct 5747289 GACTTGCACCTCTTTCATAAACCGACCTGCGAGATTTTCCAGCACGATTCCATCTGATGC 5747348 Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 34054 || || || || | || ||| | || |||| ||| ||||| | ||||| | | ||| Sbjct 5747349 GGCGAAGAAGGCGAGAACGTGTGTAATGAAATGTTTCTCGTCGGAAGTTAGGGTTTCCCA 5747408 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 | | | ||| |||| ||| |||||||| | |||||||| ||||| || || || Sbjct 5747409 GTGACCTAAATCGGATGATAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGCTTT 5747468 Query 34115 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174 ||| ||||| | |||||| | | |||| |||||||| ||| ||| ||| ||| || Sbjct 5747469 TTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATTTATCTGGGTT 5747528 Query 34175 TGGTGCAAG 34183 ||| || || Sbjct 5747529 TGGGGCTAG 5747537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629500754510880