Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_003315.1 Length=31508 Score E Sequences producing significant alignments: (Bits) Value seq29277 109 1e-19 seq2434 109 1e-19 seq21665 98.7 2e-16 seq3696 96.9 7e-16 seq32096 93.3 8e-15 seq31765 93.3 8e-15 seq25424 87.8 4e-13 seq13397 87.8 4e-13 >seq29277 Length=538 Score = 109 bits (120), Expect = 1e-19 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 358 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 417 |||||||| ||||| ||||||||| ||||||| ||||||||| |||||||||||||||| Sbjct 261 TGGTGGGTTGTGAAAGATTCGAACTTTCGACCTACGGATTAAGAGTCCGCTGCTCTACCA 202 Query 418 ACTGAGCTAACGACCCAA 435 ||||||||||| |||||| Sbjct 201 ACTGAGCTAACAACCCAA 184 Score = 105 bits (116), Expect = 1e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 358 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 417 |||||||||||| || |||||| ||||||||||||||||||||||||||||||||| Sbjct 131 TGGTGGGTCGTGCGTGACTCGAACACGCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 72 Query 418 ACTGAGCTAACGACCC 433 |||||||||||||||| Sbjct 71 ACTGAGCTAACGACCC 56 >seq2434 Length=987 Score = 109 bits (120), Expect = 1e-19 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 357 TTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACC 416 ||||| || |||| |||||||||||| |||||||||||||||||||||||||||||||| Sbjct 127 TTGGTAGGACGTGCGGGATTCGAACCTGCGACCAACGGATTAAAAGTCCGCTGCTCTACC 186 Query 417 GACTGAGCTAACGACCCA 434 |||||||||||| |||| Sbjct 187 AACTGAGCTAACGTCCCA 204 >seq21665 Length=619 Score = 98.7 bits (108), Expect = 2e-16 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 357 TTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACC 416 ||||| || ||| | ||||||||| | ||||||||||||||||||||||||||||||| Sbjct 507 TTGGTAGGACGTACAAGATTCGAACTTGTGACCAACGGATTAAAAGTCCGCTGCTCTACC 566 Query 417 GACTGAGCTAACGACCCAA 435 |||||||||||| ||||| Sbjct 567 AACTGAGCTAACGTCCCAA 585 >seq3696 Length=946 Score = 96.9 bits (106), Expect = 7e-16 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 359 GGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCGA 418 ||||||||||| || || ||||| ||||| ||||||||||||||||||||||||||| Sbjct 16 GGTGGGTCGTGCGGGGTT-GAACCCGCGACCGTCGGATTAAAAGTCCGCTGCTCTACCGA 74 Query 419 CTGAGCTAACGACCC 433 ||||||||||||||| Sbjct 75 CTGAGCTAACGACCC 89 >seq32096 Length=514 Score = 93.3 bits (102), Expect = 8e-15 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 358 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 417 ||||||| ||||| || |||||| |||||| ||||||||| |||||||||||||||| Sbjct 193 TGGTGGGGCGTGAGTGACTCGAACACTCGACCTACGGATTAAGAGTCCGCTGCTCTACCA 134 Query 418 ACTGAGCTAACGACCC 433 |||||||||||| ||| Sbjct 133 ACTGAGCTAACGCCCC 118 Score = 86.0 bits (94), Expect = 1e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 358 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 417 |||| || |||| | |||||| |||||||||||||||||||||||||||||||| Sbjct 312 TGGTAGGACGTGGCAGGCTCGAACTGCCGACCAACGGATTAAAAGTCCGCTGCTCTACCA 253 Query 418 ACTGAGCTAACGACCCA 434 |||||||||||| |||| Sbjct 252 ACTGAGCTAACGTCCCA 236 >seq31765 Length=513 Score = 93.3 bits (102), Expect = 8e-15 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 357 TTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACC 416 |||||||||| ||| || |||||| |||||| ||||||||| |||||||||||||||| Sbjct 139 TTGGTGGGTCCTGAGTGACTCGAACACTCGACCTACGGATTAAGAGTCCGCTGCTCTACC 198 Query 417 GACTGAGCTAACGACCCAA 435 |||||||||| |||||| Sbjct 199 AACTGAGCTAAGAACCCAA 217 >seq25424 Length=577 Score = 87.8 bits (96), Expect = 4e-13 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 358 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 417 ||||||| |||| ||||||||||||| ||||||| |||||| |||| |||||||||| Sbjct 51 TGGTGGGCCGTGTAGGATTCGAACCTACGACCAATTGATTAAGAGTCAACTGCTCTACCA 110 Query 418 ACTGAGCTAACGACCC 433 ||||||||||| ||| Sbjct 111 GCTGAGCTAACGGCCC 126 >seq13397 Length=733 Score = 87.8 bits (96), Expect = 4e-13 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 358 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 417 ||||||| || || || ||||||| |||||| ||||||||||||||| |||||||||| Sbjct 468 TGGTGGGACGGGAGGGGATCGAACCCTCGACCCGCGGATTAAAAGTCCGATGCTCTACCG 527 Query 418 ACTGAGCTAACGACCC 433 ||||||||| || ||| Sbjct 528 ACTGAGCTACCGTCCC 543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 100655871418440