Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq127 158 1e-33 >seq127 Length=60962716 Score = 158 bits (174), Expect = 1e-33 Identities = 571/880 (65%), Gaps = 24/880 (3%) Strand=Plus/Plus Query 11338 CTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAGTGATATAT 11396 ||| ||||| || | ||||| || | || || ||||||||||| |||| || || || Sbjct 5746644 CTTCTGATACTCCCCAACTC-TCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAAATCA 5746702 Query 11397 ACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTA 11456 ||||||| | ||| ||||| | || | | | || ||||||| | | | | | Sbjct 5746703 ACTCCATCCAATCAAACGGATTCGACACGCCGTAAATCTTCCCACAACCAAGCGCAGCCA 5746762 Query 11457 ATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAA 11516 | |||||||| || || || || ||||||||| ||| || ||| ||||| |||| | Sbjct 5746763 ACAATCTATCAGCAACAAACTCAATATACTGACTCATCAACTCACAGTTCATCCCTACCA 5746822 Query 11517 GATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTA 11576 | | || || | ||| | || ||| ||| | || || | ||| ||||| | | || Sbjct 5746823 AAGCAACAGGCAATGCATCACACACAAATTCCCTCTCAATTTCAACTGCATCTTTCACTA 5746882 Query 11577 TCG-----ACGTTATAACTTCCTTAGATGGTGGATGT--AATAAATGTTTAAACATTAAA 11629 || || || | | || || | | | | | || || | | ||| |||| Sbjct 5746883 TCCCCTGCACTTTCT--CCTCATTCG--GCTTCTTCTTCAACAA---TCCATACAATAAA 5746935 Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || |||||||||||||| | |||||||||| | || | |||||| ||||| ||||| Sbjct 5746936 CAAGCAAAATCACAATGAAGTCCTTCGTCTCGAGAGATCAATTCATTCGAAAACGTTAAA 5746995 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATAT--AGCAGCAAATGAACCAGAAAAGA 11747 || ||||| | || || || || | |||||| || ||||| || | || || |||| Sbjct 5746996 CCCGGCATTAGCCCACGCTTCTTAAGCCAAAAAATGGAGCAGAAACT--TCCTGAGAAGA 5747053 Query 11748 ATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATA 11807 |||| || || | | ||||| || | || || ||| || || | | | | Sbjct 5747054 ATATCCCTTCAATACAAGCAAACGCAATTATCCTCTCTGCAAATGATTCAGACCCATCAA 5747113 Query 11808 TCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAA 11867 |||| | ||||||||||| |||||||| || || || ||||| || || || Sbjct 5747114 TCCACCTCAGTGCCCAATCAGCCTTCTTTTTCACACAGGGCACGGTTTCGATTGCTCGAA 5747173 Query 11868 ATAAATG-CATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATT 11926 | | || |||||| || ||| | | || || |||| | | |||||| Sbjct 5747174 AGAGGTGAGATTTTTGGGAT-GAATCCTTAATGTAAGTTTCTAAAAGGAGTGAGTACATT 5747232 Query 11927 TCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC 11986 || |||||||| ||||| || || |||||||| || || || || || || | Sbjct 5747233 TCAGAATGAATGTTTTCAATGGCGATTTGAAAACCGTAAAATGCGCGCGCTTCAGCGACT 5747292 Query 11987 TGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGC 12045 || || || ||| ||| | | || | ||| || || || ||||| | || Sbjct 5747293 TGCACCTCTTTCAT-AAACCGACCTGCGAGATTTTCCAGCACGATTCCATCTGATGCGGC 5747351 Query 12046 AAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATC 12105 || || || || | ||| | || || | ||| ||||| ||||| | ||||| | Sbjct 5747352 GAAGAAGGCGAGAACGTGTGTAATGAAATGTTTCTCGTCGGAAGTTAGGGTTTCCCAGTG 5747411 Query 12106 ATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTT 12165 | ||||||| ||||| ||| ||||||||| | |||||||| ||| | | || ||| Sbjct 5747412 ACCTAAATCGGATGATAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGCTTTTTT 5747471 Query 12166 ATACATTTTCCAGATATCATGATACTTAATAGGGAAAATA 12205 ||||||| |||||| | | || | ||| ||||| ||| Sbjct 5747472 GTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATA 5747511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468289096886240