Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq127 233 3e-56 >seq127 Length=60962716 Score = 233 bits (258), Expect = 3e-56 Identities = 418/602 (69%), Gaps = 10/602 (2%) Strand=Plus/Plus Query 36155 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 36214 ||||| || ||||| || || || || ||||||| | || ||||| || |||||||| Sbjct 5746933 AAACAAGCAAAATCACAATGAAGTCCTTCGTCTCGAGAGATCAATTCATTCGAAAACGTT 5746992 Query 36215 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAA 36273 | || |||||||| |||||||| ||||||||||| ||||| ||| || ||| || || Sbjct 5746993 AAACCCGGCATTAGCCCACGCTTCTTAAGCCAAAAAATGGA-GCAGAAACTTCCTGAGAA 5747051 Query 36274 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATG 36333 ||| || ||||| | ||||| ||||| | |||||| || | || ||| Sbjct 5747052 GAATATCCCTTCAATACAAGCAAACGCAATTATCCTCTCTGCAAATGATTCAGACCCATC 5747111 Query 36334 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393 |||||| | | |||||||| ||||||||||| ||||| |||| || || || || Sbjct 5747112 AATCCACCTCAGTGCCCAATCAGCCTTCTTTTTCACACAGGGCACGGTTTCGATTGCTCG 5747171 Query 36394 AAAGAGAT-AG-tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACT--AT 36449 |||||| | || ||||| || | ||| |||| || || || | ||| || | | Sbjct 5747172 AAAGAGGTGAGATTTTTGGGATGA--ATCCTTAATGTAAGTTTC--TAAAAGGAGTGAGT 5747227 Query 36450 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 36509 ||||||| |||||||||||||||||||| |||||||| ||||| || | || || | Sbjct 5747228 ACATTTCAGAATGAATGTTTTCAATGGCGATTTGAAAACCGTAAAATGCGCGCGCTTCAG 5747287 Query 36510 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 36569 | || || ||| | ||| || |||| | |||||| ||| ||||| || | Sbjct 5747288 CGACTTGCACCTCTTTCATAAACCGACCTGCGAGATTTTCCAGCACGATTCCATCTGATG 5747347 Query 36570 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCC 36629 | || || || || | || ||| | || |||| ||| |||| | ||||| | | || Sbjct 5747348 CGGCGAAGAAGGCGAGAACGTGTGTAATGAAATGTTTCTCGTCGGAAGTTAGGGTTTCCC 5747407 Query 36630 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 36689 | | | | ||| |||| ||| |||||||| | |||||||| ||||| || || | Sbjct 5747408 AGTGACCTAAATCGGATGATAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGCTT 5747467 Query 36690 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGAT 36749 |||| ||||| | |||||| | | |||| |||||| || ||| ||| ||| | | | Sbjct 5747468 TTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATTTATCTGGGT 5747527 Query 36750 TT 36751 || Sbjct 5747528 TT 5747529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657841689718640