Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq58 104 2e-17 seq157 100 3e-16 seq57 98.7 1e-15 seq146 89.7 5e-13 seq1 87.8 2e-12 >seq58 Length=2649046 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| |||||| | || | || | || ||||| ||||| ||||| || ||| Sbjct 1146697 CCTCCTCTTAAACGGAGGACAAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGCG 1146638 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| || ||||| || ||| |||| | |||||| ||||| ||||| Sbjct 1146637 AGAGTTCGGCCGTCTTCAAGTTGTTTTCCGGCAAAGATTAAACGTTGTTGATCTGGAGGA 1146578 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| ||| |||| | || | ||||||| ||| ||| Sbjct 1146577 ATTCCTTCCTTGTCTTGGATCTTTGCCTTTACGTTGTCGATGGTGTCGGAACTCTCAACC 1146518 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||||||||| | ||||| ||||| |||||||| Sbjct 1146517 TCGAGAGTTATGGTCTTGCCGGTAAGGGTTTTCACGAAGATTTGCAT 1146471 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || || || |||||| | || | | |||||||||||| || ||| Sbjct 1146895 GTTGACTCCTTCTGGATATTGTAATCGGCGAGGGTTCGCCCGTCTTCGAGCTGCTTTCCA 1146836 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 || ||||||| | |||||| || || || |||||||| ||||| ||| |||| | ||| Sbjct 1146835 GCGAAGATCAGCCTTTGCTGGTCTGGTGGAATGCCTTCCTTGTC-TTGAATTTTGGCTTT 1146777 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | || |||| || || |||| ||| | |||||||| || | || Sbjct 1146776 GACGTTGTCGATAGTATCGGAACTTTCGACTTCAAGGGTGATTGTCTTGCCAGTAAGAGT 1146717 Query 139747 TTTTACGAATATTTGCATAGCT 139768 || ||||| || |||||| || Sbjct 1146716 CTTGACGAAGATCTGCATACCT 1146695 >seq157 Length=426068 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| || ||||| || ||||| | || | |||||||| || Sbjct 398031 TGAAGGGTTGACTCCTTCTGAATATTGTAATCAGCAAGGGTTCGGCCATCTTCGAGTTGC 397972 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||| ||| |||||||||||||||| || ||||| ||||| || ||||| ||| | || Sbjct 397971 TTACCGGCAAAGATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTC-TTGAATCTT 397913 Query 139682 TGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || ||| | | || | ||| || | ||||||||| | || | |||||| || || Sbjct 397912 TGCCTTAACATTGTCAATTGTATCAGAACTCTCCACCTCGAGAGTGATCGTCTTACCAGT 397853 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 ||| || || || || |||||||| Sbjct 397852 CAAGGTCTTAACAAAGATTTGCAT 397829 >seq57 Length=33024243 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | ||| | ||||| || |||||||| || ||||| ||||| Sbjct 18658232 CCACCTCTCAGACGAAGAACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAATCAGCA 18658291 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| ||||| || ||||| || || | ||||||||||| || || || || Sbjct 18658292 AGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAAATCAGACGTTGTTGGTCTGGTGGA 18658351 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| ||| ||| ||| | | || | ||||||| || || || Sbjct 18658352 ATGCCTTCTTTGTCTTGGATCTTTGCTTTCACATTGTCGATGGTGTCGGAGGATTCGACT 18658411 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || || || || | ||||| ||||| || ||||| Sbjct 18658412 TCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 18658458 >seq146 Length=1334862 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| ||| || ||||| |||||||| ||||| | || || ||||| Sbjct 1120077 ACCAAGTGAAGCGTTGATTCTTTCTGAATGTTGTAATCTGCGAGAGTTCTTCCATCTTCC 1120018 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | ||||| || || | ||||| ||||| ||||| || || || ||||||||||| | Sbjct 1120017 AATTGTTTTCCGGCGAAAATCAGGCGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGG 1119958 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || ||| ||| | | || | ||| |||| | ||||| || | ||| | || || Sbjct 1119957 ATCTTTGTTTTCACGTTGTCGATTGTATCGGAAGATTCCACTTCTAGGGTTATGGTTTTT 1119898 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | ||||| ||||| || ||||| Sbjct 1119897 CCAGTTAGGGTTTTCACGAAAATCTGCAT 1119869 >seq1 Length=34941034 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 ||||| | || | ||| | || ||||| || || || ||||||||| || ||| || Sbjct 3650009 AAACGAAGCACCAGGTGCAAAGTGGACTCCTTCTGGATATTATAATCGGCCAATGTCCTG 3649950 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 || || ||||||||||| ||| |||| || | ||||| || || || || ||||| Sbjct 3649949 CCATCCTCAAGCTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATTCCTTCC 3649890 Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTC-CACT-GTGTCGGTGGGCTCCACCTCAACGG 139724 ||||| ||| | || || || | |||| || | ||||| | ||| || || | || Sbjct 3649889 TTGTC-CTGAATCTTAGTCTT-GACGTTCTCAATAGTGTCAGAACTCTCAACTTCCAAGG 3649832 Query 139725 TCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || |||||||| || | ||||| || || || |||||| Sbjct 3649831 TTACTGTCTTGCCTGTGAGGGTTTTAACAAAGATCTGCATA 3649791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495814442603200