Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq127 248 1e-60 >seq127 Length=60962716 Score = 248 bits (274), Expect = 1e-60 Identities = 601/900 (67%), Gaps = 14/900 (2%) Strand=Plus/Plus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 || || || || || || | || || || |||||||| || |||| | || || Sbjct 5746645 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAAATCAAC 5746704 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 ||||| ||||||||||||| | || ||||| || | | || | ||| | | Sbjct 5746705 TCCATCCAATCAAACGGATTCGACACGCCGTAAATCTTCCCACAACCAAGCGCAGCCAAC 5746764 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848 |||||||| || ||||| || ||||| |||||| ||||| ||||| |||| | Sbjct 5746765 AATCTATCAGCAACAAACTCAATATACTGACTCATCAACTCACAGTTCATCCCTACCAAA 5746824 Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908 ||| || | || || | |||||| ||||| || |||||| | | || Sbjct 5746825 GCAACAGGCAATGCATCACACACAAATTCCCTCTCAATTTCAACTGCATCTTTCACTATC 5746884 Query 49909 GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAA 49968 || | || ||| |||| | | || | | ||| ||||| || ||| Sbjct 5746885 CCCTGCACTTTCTCCTCATTCGGCTTCTTCTTCAACAATCCATACAATAAACAAGCAAAA 5746944 Query 49969 TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATT 50028 || || || || || ||||||| | || | ||| || |||||||| | || |||||| Sbjct 5746945 TCACAATGAAGTCCTTCGTCTCGAGAGATCAATTCATTCGAAAACGTTAAACCCGGCATT 5747004 Query 50029 AGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGATTCCTTC 50087 || |||||||| ||||||||||| ||||| ||| || || || ||||| || ||||| Sbjct 5747005 AGCCCACGCTTCTTAAGCCAAAAAATGGA-GCAGAAACTTCCTGAGAAGAATATCCCTTC 5747063 Query 50088 TACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTC--ATGTATCCACTTT 50145 | ||||| |||| | |||||| || | || | | | || |||||| | Sbjct 5747064 AATACAAGCAAACGCAATTATCCTCTCTGCAAA--TGATTCAGACCCATCAATCCACCTC 5747121 Query 50146 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT-A 50204 | |||||||| ||||||||||| ||||| |||| ||||| || || |||||| | | Sbjct 5747122 AGTGCCCAATCAGCCTTCTTTTTCACACAGGGCACGGTTTCGATTGCTCGAAAGAGGTGA 5747181 Query 50205 GtttttttC-ATTACTATCTTTAACATAAGTATCGATCAAAAGACTA--TACATTTCCGA 50261 | ||||| || | ||| |||| ||||| || | ||| || | |||||||| || Sbjct 5747182 GATTTTTGGGATGA--ATCCTTAATGTAAGTTTCTA--AAAGGAGTGAGTACATTTCAGA 5747237 Query 50262 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCAC 50321 |||||||||||||||||| || ||||| ||||| || | || || | | ||||| Sbjct 5747238 ATGAATGTTTTCAATGGCGATTTGAAAACCGTAAAATGCGCGCGCTTCAGCGACTTGCAC 5747297 Query 50322 TTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 50381 ||| | ||| || | || | |||||| ||| ||||| || || || || || Sbjct 5747298 CTCTTTCATAAACCGACCTGCGAGATTTTCCAGCACGATTCCATCTGATGCGGCGAAGAA 5747357 Query 50382 CGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGAT 50441 || | || ||| | || |||||||| |||| || ||||| | | ||| | | | Sbjct 5747358 GGCGAGAACGTGTGTAATGAAATGTTTCTCGTCGGAAGTTAGGGTTTCCCAGTGACCTAA 5747417 Query 50442 ATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 50501 ||| |||| ||| |||||||| | |||||||| ||||| || || ||||| ||||| Sbjct 5747418 ATCGGATGATAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGCTTTTTTGTACAT 5747477 Query 50502 ATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAG 50561 | |||||| | | |||| |||||||| ||| ||| ||| ||| ||||| || || Sbjct 5747478 TTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATTTATCTGGGTTTGGGGCTAG 5747537 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| || || | |||| || || | ||| | || | || |||||| | ||| || Sbjct 7120182 TCCTCCTTGGTCAACATATCGTGCTGTATCATTGAACACCCGCAGCATTGGGACAATGCC 7120241 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||||| ||||| || || ||||| |||||| ||||||| ||||| || || Sbjct 7120242 ATTCGATGTCCCATTTGTACCACGTATATAACTTCCAGTGGCACGGATATTGTGAACAGA 7120301 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || || || || |||| ||| | || || || | |||||||| || Sbjct 7120302 GACACCAATACCTCCAGCAGATTTACTGATAACAGCACACTCCTTCAGAGTATCATATAT 7120361 Query 80274 GCCCTCTATGCTATCATCAATCAT 80297 || || ||||||||||| |||| Sbjct 7120362 TCCTTCAATGCTATCATCTTTCAT 7120385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717907456923440