Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq127 125 7e-24 >seq127 Length=60962716 Score = 125 bits (138), Expect = 7e-24 Identities = 552/861 (64%), Gaps = 31/861 (4%) Strand=Plus/Plus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 || ||||| || | |||||| || |||||||| ||||| || |||| || || || Sbjct 5746645 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAAATCAAC 5746704 Query 13641 TCCATAAAATCAAATGGATTTATTGACA-----TAAACACTTTATCACAACCTAGTTCTA 13695 ||||| ||||||| ||||| |||| |||| || ||||||| || | Sbjct 5746705 TCCATCCAATCAAACGGATTC---GACACGCCGTAAATC--TTCCCACAACCAAGCGCAG 5746759 Query 13696 ATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTA 13755 | ||||||||||||| |||||||||||| ||| ||| || ||||| ||||| |||| Sbjct 5746760 CCAACAATCTATCAGCAACAAACTCAATATACTGACTCATCAACTCACAGTTCATCCCTA 5746819 Query 13756 TTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTA 13815 | ||||| | | || | |||||| | || || || || ||||| | Sbjct 5746820 CCAAAGCAACAGGCAATGCATCACACACAAATTCCCTCTCAATTTCAACTGCATCTTTCA 5746879 Query 13816 TAATAAT-TGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACAC 13874 || || | | |||| | | || | || | | | | | |||||| Sbjct 5746880 CTATCCCCTGCACTT-TCTCCTCATTCGGCTTCTTCTTCAACAATCCATACAATAAACAA 5746938 Query 13875 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13934 ||||||||||||||||| || || |||| | || | ||| || ||||| ||||| || Sbjct 5746939 GCAAAATCACAATGAAGTCCTTCGTCTCGAGAGATCAATTCATTCGAAAACGTTAAACCC 5746998 Query 13935 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAAGAATAT 13993 ||||| | || || || || | |||||| | || |||| || || || |||||||| Sbjct 5746999 GGCATTAGCCCACGCTTCTTAAGCCAAAA-AATGGAGCAGAAACTTCCTGAGAAGAATAT 5747057 Query 13994 TCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT-- 14051 || |||| ||||||||| |||| | ||| |||| || || | | || Sbjct 5747058 CCCTTCAATACAAGCAAACGCAATTATCCTCTCTGCAAATGA-----TTCAGACCCATCA 5747112 Query 14052 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14111 ||||| | ||||| |||| || ||||| | | | || ||||| || || | Sbjct 5747113 ATCCACCTCAGTGCCCAATCAGCCTTCTTTTTCACACAGGGCACGGTTTCGATTGCTCGA 5747172 Query 14112 AATA---AATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14168 || | | ||| || | | | ||| |||||| || || | ||| | ||| Sbjct 5747173 AAGAGGTGAGATT-TTTGGGATGAATCCTT--AATGTAAGTTTCTAAAAGGAGTGAGTAC 5747229 Query 14169 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC--CG 14226 |||||||| || |||||||| || || || |||||||| ||||| | ||||| || Sbjct 5747230 ATTTCAGAATGAATGTTTTCAATGGCGATTTGAAAACCGTAAAATGCGCGCGCTTCAGCG 5747289 Query 14227 ACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14286 || ||| || || ||| | | || | |||||| || || ||||| | Sbjct 5747290 AC--TTGCACCTCTTTCATAAACCGACCTGCGAGATTTTCCAGCACGATTCCATCTGATG 5747347 Query 14287 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCC 14346 | || || || || | | || | |||| || | || ||| || | || ||| || Sbjct 5747348 CGGCGAAGAAGGCGAGAACGTGTGTAATGAAATGTTTCTCGTCGGAAGTTAGGGTTTCCC 5747407 Query 14347 AATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTT 14406 | | |||||| || ||||| ||||| ||| | |||||||| || | |||| Sbjct 5747408 AGTGACCTAAATCGGATGATAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGCTT 5747467 Query 14407 TTTTATACATTACCCATATTT 14427 |||| |||||| |||| |||| Sbjct 5747468 TTTTGTACATTTCCCAGATTT 5747488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479486660836400