Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq127 138 1e-27 >seq127 Length=60962716 Score = 138 bits (152), Expect = 1e-27 Identities = 550/856 (64%), Gaps = 21/856 (2%) Strand=Plus/Plus Query 13369 TTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428 || ||||| || | |||||| || ||||| || ||||| || |||| || || || Sbjct 5746645 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAAATCAAC 5746704 Query 13429 TCCATAAAATCGAATGGATTTGTT--GACATAAACACTTTATCACAACCTAGTTCTAATA 13486 ||||| |||| || ||||| | | | |||| || ||||||| || | | Sbjct 5746705 TCCATCCAATCAAACGGATTCGACACGCCGTAAATC--TTCCCACAACCAAGCGCAGCCA 5746762 Query 13487 ATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13546 | ||||||||||||| |||||||||||| ||| ||| || ||||| ||||| |||| | Sbjct 5746763 ACAATCTATCAGCAACAAACTCAATATACTGACTCATCAACTCACAGTTCATCCCTACCA 5746822 Query 13547 GTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 13606 ||||| | | || | | |||||| | || || || || || || | | Sbjct 5746823 AAGCAACAGGCAATGCATCACACACAAATTCCCTCTCAATTTCAACTGCATCTTTCACTA 5746882 Query 13607 TAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAA 13666 | || | | || | | || | || | | | | | |||||| |||| Sbjct 5746883 TCCCCTGCACTTTCTCCTCATTCGGCTTCTTCTTCAACAATCCATACAATAAACAAGCAA 5746942 Query 13667 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13726 ||||||||||||| || || |||| | || | ||| || ||||| ||||| || |||| Sbjct 5746943 AATCACAATGAAGTCCTTCGTCTCGAGAGATCAATTCATTCGAAAACGTTAAACCCGGCA 5747002 Query 13727 TCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAAGAATATTCCC 13785 | | || || || || | |||||| | || ||| ||| ||| || |||||||| || Sbjct 5747003 TTAGCCCACGCTTCTTAAGCCAAAA-AATGGAGCAGAAACTTCCTGAGAAGAATATCCCT 5747061 Query 13786 TCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT--ATCC 13843 |||| ||||||||| |||| | ||| |||| || || | || |||| Sbjct 5747062 TCAATACAAGCAAACGCAATTATCCTCTCTGCAAATGA-----TTCAGACCCATCAATCC 5747116 Query 13844 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATA 13903 | | ||||| |||| || ||||| | | | || ||||||||||| | ||| | Sbjct 5747117 ACCTCAGTGCCCAATCAGCCTTCTTTTTCACACAGGGCACGGTTTCGATTGC-TCGAA-A 5747174 Query 13904 AATGT----TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 13959 | || | || | | | ||| |||||| || || | ||| | |||||| Sbjct 5747175 GAGGTGAGATTTTTGGGATGAATCCTT--AATGTAAGTTTCTAAAAGGAGTGAGTACATT 5747232 Query 13960 TCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT 14019 ||||| || |||||||| || || || |||||||| ||||| | ||||| | | Sbjct 5747233 TCAGAATGAATGTTTTCAATGGCGATTTGAAAACCGTAAAATGCGCGCGCTTCAGCGACT 5747292 Query 14020 TGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCA 14079 || ||||| ||| | |||| | ||||| || || ||||| || || Sbjct 5747293 TGCACCTCTTTCATAAACCGACCTGCGAGATTTTCCAGCACGATTCCATCTGATGCGGCG 5747352 Query 14080 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCG 14139 || || || | | || | |||| || | || ||| || | || ||| ||| | Sbjct 5747353 AAGAAGGCGAGAACGTGTGTAATGAAATGTTTCTCGTCGGAAGTTAGGGTTTCCCAGTGA 5747412 Query 14140 GCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTA 14199 ||||||| || ||||| ||||| ||| | |||||||| || | |||||||| Sbjct 5747413 CCTAAATCGGATGATAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGCTTTTTTG 5747472 Query 14200 TACATTACCCATATTT 14215 |||||| |||| |||| Sbjct 5747473 TACATTTCCCAGATTT 5747488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478348033939440