Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq146 111 1e-19 seq170 91.5 1e-13 seq1 87.8 1e-12 >seq146 Length=1334862 Score = 111 bits (122), Expect = 1e-19 Identities = 168/238 (71%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 42875 AATCGTCG--CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATT 42932 |||| ||| || ||||| || |||| |||||| || | || || || || | || Sbjct 1120105 AATCATCGTACCACCACGAAGCCTTAGCACCAAGTGAAGCGTTGATTCTTTCTGAATGTT 1120046 Query 42933 GTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTG 42992 |||||| | | || | | | || ||||||||||| ||||| ||||||| || ||||| Sbjct 1120045 GTAATCTGCGAGAGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAAATCAGGCGTTGTTG 1119986 Query 42993 ATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCC 43052 ||| | || | |||||||| || |||| ||| || || | | ||| ||| Sbjct 1119985 ATCTGGTGGAATTCCTTCTTTGTCTTGGATCTTTGTTTTCACGTTGTCGATTGTATCGGA 1119926 Query 43053 AGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || || || |||| ||||| |||||||| ||||| |||||||| ||||| |||||| Sbjct 1119925 AGATTCCACTTCTAGGGTTATGGTTTTTCCAGTTAGGGTTTTCACGAAAATCTGCATT 1119868 >seq170 Length=38796167 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || || ||||||||||| | | || || || | |||||||| Sbjct 3261138 CCACCACGAAGCCTGAACACCAAATGAAGCTTCAATTCTTTCTGAATGTTGTAATCTACG 3261197 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | | || ||||||||||| | ||| ||||||| || |||||||| | | Sbjct 3261198 AGAGTTCTTCCATCTTCCAATTGTTTTCTGGCGAAAATCAGGCGTTGTTGATCTGGTGAA 3261257 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| ||| || || | | | | ||| || ||||| Sbjct 3261258 ATTCCTTCCTTGTCTTGGATCTTTGTTTTCACGTTGTCGATTATATCGAAAGATTCGACT 3261317 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTTAATTT 43120 |||| ||||| ||||||| |||| |||||||| ||||| |||||||| |||||| Sbjct 3261318 TCTAGGGTTATGGTTTTTCTAGTTACGGTTTTCACGAAAATCTGCATTTTGATAATTT 3261375 >seq1 Length=34941034 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||| | ||| |||||||| | ||||| || | || || | | | || ||| Sbjct 3649544 ACCAAATGAAGAGTTGATTCCTTTTGGATGTTGTAGTCTGCTAACGTCCTTCCATCCTCC 3649485 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | |||||| || ||||| |||| | ||| ||||| | || | || || || || | Sbjct 3649484 AGTTGTTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGTGGAATCCCCTCCTTGTCCTGG 3649425 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTT 43079 ||| ||||| | | | |||||| ||| |||||| || | || ||||| || Sbjct 3649424 ATCTTGGTCTTGACATTATCGATTGTGTCTG-AGCTCTCGACTTCGAGAGTAATAGTCTT 3649366 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||||| |||||||||||||| |||||||| Sbjct 3649365 TCCGGTGAGAGTTTTCACAAAGATTTGCAT 3649336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381182538926268