Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq127 250 3e-61 >seq127 Length=60962716 Score = 250 bits (276), Expect = 3e-61 Identities = 599/898 (67%), Gaps = 10/898 (1%) Strand=Plus/Plus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 || || || || || || | || || || ||||||||||| |||| | || || Sbjct 5746645 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAAATCAAC 5746704 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 ||||| ||||||||||||| | || ||||| || | | || | ||| | | Sbjct 5746705 TCCATCCAATCAAACGGATTCGACACGCCGTAAATCTTCCCACAACCAAGCGCAGCCAAC 5746764 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 |||||||| || | || || ||||| |||||| ||||| ||||| |||| | Sbjct 5746765 AATCTATCAGCAACAAACTCAATATACTGACTCATCAACTCACAGTTCATCCCTACCAAA 5746824 Query 41954 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013 ||| || | || || | |||||| ||||| || || ||| | | || Sbjct 5746825 GCAACAGGCAATGCATCACACACAAATTCCCTCTCAATTTCAACTGCATCTTTCACTATC 5746884 Query 42014 GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 42073 ||| | || ||| |||| | | || | | ||| ||||| || ||| Sbjct 5746885 CCCTGCACTTTCTCCTCATTCGGCTTCTTCTTCAACAATCCATACAATAAACAAGCAAAA 5746944 Query 42074 TCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 42133 || || || || || || |||| | || ||||| || |||||||| | || |||||| Sbjct 5746945 TCACAATGAAGTCCTTCGTCTCGAGAGATCAATTCATTCGAAAACGTTAAACCCGGCATT 5747004 Query 42134 AGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAAGATTCCTTC 42192 || |||||||| ||||||||||| || || ||| || ||| || ||||| || ||||| Sbjct 5747005 AGCCCACGCTTCTTAAGCCAAAAAATGGA-GCAGAAACTTCCTGAGAAGAATATCCCTTC 5747063 Query 42193 TACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTTTG 42252 | ||||| ||||| | |||||| || | || ||| |||||| | | Sbjct 5747064 AATACAAGCAAACGCAATTATCCTCTCTGCAAATGATTCAGACCCATCAATCCACCTCAG 5747123 Query 42253 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT-AG- 42310 |||||||| ||||||||||| ||||| |||| ||||| || || |||||| | || Sbjct 5747124 TGCCCAATCAGCCTTCTTTTTCACACAGGGCACGGTTTCGATTGCTCGAAAGAGGTGAGA 5747183 Query 42311 tttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACT--ATACATTTCTGAAT 42368 ||||| || | ||| |||| || || || | ||| || | |||||||| |||| Sbjct 5747184 TTTTTGGGATGA--ATCCTTAATGTAAGTTTC--TAAAAGGAGTGAGTACATTTCAGAAT 5747239 Query 42369 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTT 42428 |||||||||||||||| || ||||| ||||| || | || || | || || || | Sbjct 5747240 GAATGTTTTCAATGGCGATTTGAAAACCGTAAAATGCGCGCGCTTCAGCGACTTGCACCT 5747299 Query 42429 CTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACG 42488 || | ||| || | || | |||||| ||| ||||| || || || || || | Sbjct 5747300 CTTTCATAAACCGACCTGCGAGATTTTCCAGCACGATTCCATCTGATGCGGCGAAGAAGG 5747359 Query 42489 CCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATAT 42548 | | || ||| | || |||| ||| ||||| | |||| | | ||| | | | || Sbjct 5747360 CGAGAACGTGTGTAATGAAATGTTTCTCGTCGGAAGTTAGGGTTTCCCAGTGACCTAAAT 5747419 Query 42549 CTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATAT 42608 | |||| ||| |||||||| |||||||||| |||||||| || ||||| ||||| | Sbjct 5747420 CGGATGATAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGCTTTTTTGTACATTT 5747479 Query 42609 TCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAG 42666 |||||| | | |||| ||||||||| ||| ||| ||| ||| ||||| || || Sbjct 5747480 CCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATTTATCTGGGTTTGGGGCTAG 5747537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670801566646960