Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_004629.1 Length=280334 Score E Sequences producing significant alignments: (Bits) Value seq10036 96.9 6e-15 seq31886 95.1 2e-14 seq10815 95.1 2e-14 seq3369 95.1 2e-14 seq27395 89.7 9e-13 seq2434 87.8 3e-12 seq25814 84.2 4e-11 >seq10036 Length=796 Score = 96.9 bits (106), Expect = 6e-15 Identities = 70/80 (88%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 273268 AAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCTA 273327 || ||||||| || | | || |||||| |||||||||||||||||||||||||||||||| Sbjct 278 AATTGGTCGGGGTAGAGGGATTCGAACCCCCGACATCCTGCTCCCAAAGCAGGCGCGCTA 337 Query 273328 CCA-ACTGCGCTACACTCCG 273346 ||| ||||||||| || ||| Sbjct 338 CCAGACTGCGCTATACCCCG 357 >seq31886 Length=516 Score = 95.1 bits (104), Expect = 2e-14 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 271823 TGGCGCGCCCAAGGGGACTCGAACCCCTGACCACCCGCGTGACAGGCGGGTATTCTAACC 271882 |||||| | | ||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 207 TGGCGCAGCGGACGGGACTCGAACCCGCGACCACCCGCGTGACAGGCGGGTATTCTAACC 148 Query 271883 AACTGAACTA 271892 |||||||||| Sbjct 147 AACTGAACTA 138 >seq10815 Length=781 Score = 95.1 bits (104), Expect = 2e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 271741 TGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTACCG 271800 ||||||| ||||||||||||||||||||||| ||||||||||| | ||||||||| Sbjct 366 TGGCTCCCCGACCTGGACTCGAACCAGGGACCTGCGGATTAACAGTCCGTCGCTCTACCG 307 Query 271801 ACTGAGCTATCACGGAA 271817 |||||||||||| |||| Sbjct 306 ACTGAGCTATCAGGGAA 290 >seq3369 Length=955 Score = 95.1 bits (104), Expect = 2e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 271741 TGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTACCG 271800 ||||||| ||||||||||||||||||||||| ||||||||||| | ||||||||| Sbjct 460 TGGCTCCCCGACCTGGACTCGAACCAGGGACCTGCGGATTAACAGTCCGTCGCTCTACCG 401 Query 271801 ACTGAGCTATCACGGAA 271817 |||||||||||| |||| Sbjct 400 ACTGAGCTATCAGGGAA 384 >seq27395 Length=556 Score = 89.7 bits (98), Expect = 9e-13 Identities = 68/79 (86%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 273270 ATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCTACC 273329 ||||||||||||| |||| ||||||||||||| ||| ||||||| ||| |||||||| Sbjct 165 ATGGTCGGAGTGGAGAGATTCGAACTCCCGACCCTCTGGTCCCAAACCAGATGCGCTACC 224 Query 273330 A-ACTGCGCTACACTCCGT 273347 | |||||||||||||||| Sbjct 225 AGGCTGCGCTACACTCCGT 243 >seq2434 Length=987 Score = 87.8 bits (96), Expect = 3e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 271741 TGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTACCG 271800 ||||||| ||||||| ||||||||||||||| | ||||||||||| ||||||||| Sbjct 28 TGGCTCCTCGACCTGGGCTCGAACCAGGGACCTACGGATTAACAGTCCGGCGCTCTACCG 87 Query 271801 ACTGAGCTATCACGGAAT 271818 ||||||||||| ||||| Sbjct 88 ACTGAGCTATCGAGGAAT 105 >seq25814 Length=573 Score = 84.2 bits (92), Expect = 4e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 272872 TGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC 272931 |||||||||| | ||||||||||| ||||||| | ||||||| | | ||||||||| Sbjct 346 TGGTGGGCCCGGAGGGACTTGAACCCCCGACCAAACCGTTATGAGCGGTCCGCTCTAACC 287 Query 272932 AACTGAGCTATAGGCCCTT 272950 |||||||||| |||||||| Sbjct 286 AACTGAGCTACAGGCCCTT 268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896489571507040