Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq146 132 3e-26 seq57 127 1e-24 seq58 107 1e-18 seq170 105 5e-18 seq145 95.1 9e-15 seq1 95.1 9e-15 >seq146 Length=1334862 Score = 132 bits (146), Expect = 3e-26 Identities = 165/225 (73%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG 15208 |||| || || ||||| || || ||||| || ||||||||||| ||| |||| | Sbjct 1120083 CTTAGCACCAAGTGAAGCGTTGATTCTTTCTGAATGTTGTAATCTGCGAGAGTTCTTCCA 1120024 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| |||||||| || ||| | |||| |||||||| || |||||||||||||||| Sbjct 1120023 TCTTCCAATTGTTTTCCGGCGAAAATCAGGCGTTGTTGATCTGGTGGAATTCCTTCTTTG 1119964 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || || || | || || | || || |||||| | ||| || |||| ||| ||| Sbjct 1119963 TCTTGGATCTTTGTTTTCACGTTGTCGATTGTATCGGAAGATTCCACTTCTAGGGTTATG 1119904 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAAT 15373 ||||| || || || ||||| || ||||| ||||| | ||| ||| Sbjct 1119903 GTTTTTCCAGTTAGGGTTTTCACGAAAATCTGCAT-TCTGAGAAT 1119860 >seq57 Length=33024243 Score = 127 bits (140), Expect = 1e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| | | ||| | ||||| || || ||||| || ||||||||||| Sbjct 18658232 CCACCTCTCAGACGAAGAACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAATCAGCA 18658291 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | |||||| || ||| | |||| |||||||||||| |||| Sbjct 18658292 AGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAAATCAGACGTTGTTGGTCTGGTGGA 18658351 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||||||||| || |||||| || ||| | || ||||| ||| ||| || Sbjct 18658352 ATGCCTTCTTTGTCTTGGATCTTTGCT-TTCACATTGTCGATGGTGTCGGAGGATTCGAC 18658410 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 |||| ||| ||||||||||| || || ||||| || || || ||||| ||| Sbjct 18658411 TTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTTT 18658462 >seq58 Length=2649046 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| || | | || | ||| || || || || ||||| |||||||| ||| Sbjct 1146697 CCTCCTCTTAAACGGAGGACAAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGCG 1146638 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| ||| ||||||| | |||||| || || | || ||||||||||| || ||| Sbjct 1146637 AGAGTTCGGCCGTCTTCAAGTTGTTTTCCGGCAAAGATTAAACGTTGTTGATCTGGAGGA 1146578 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| ||||| || ||||| |||||| | || ||||| ||| | | || || Sbjct 1146577 ATTCCTTCCTTGTCTTGGATCTTTGC-CTTTACGTTGTCGATGGTGTCGGAACTCTCAAC 1146519 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || ||||| || || || || ||||| || || |||||||| Sbjct 1146518 CTCGAGAGTTATGGTCTTGCCGGTAAGGGTTTTCACGAAGATTTGCAT 1146471 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || ||||| | | ||| |||||||||||||| || || || || |||||||| Sbjct 1147153 CCTCCCCTCAAACGGAGAACCAAATGAAGGGTGGATTCCTTCTGGATATTGTAATCAGCC 1147094 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| | || || ||||| | ||||| | || ||||| ||| Sbjct 1147093 AAAGTACGGCCATCTTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGAGGA 1147034 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| ||| || ||| ||| | || || ||||| |||| || Sbjct 1147033 ATACCTTCCTTGTCCTGAATCTTAGCCTTAACATTGTCGATCGTATCCGAGCTTTCAACT 1146974 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || || || || ||||| || ||||| ||||||||| Sbjct 1146973 TCCAAAGTAATCGTCTTCCCGGTGAGAGTCTTCACAAAGATTTGCATA 1146926 >seq170 Length=38796167 Score = 105 bits (116), Expect = 5e-18 Identities = 159/225 (71%), Gaps = 1/225 (0%) Strand=Plus/Plus Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG 15208 || || || |||||||| | | ||||| || ||||||||||| ||| |||| | Sbjct 3261150 CTGAACACCAAATGAAGCTTCAATTCTTTCTGAATGTTGTAATCTACGAGAGTTCTTCCA 3261209 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| |||||||| | ||| | |||| |||||||| || || ||||||||| ||| Sbjct 3261210 TCTTCCAATTGTTTTCTGGCGAAAATCAGGCGTTGTTGATCTGGTGAAATTCCTTCCTTG 3261269 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || || || | || || | || || ||||| | ||| || |||| ||| ||| Sbjct 3261270 TCTTGGATCTTTGTTTTCACGTTGTCGATTATATCGAAAGATTCGACTTCTAGGGTTATG 3261329 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAAT 15373 ||||| | || | ||||| || ||||| ||||| ||||| ||| Sbjct 3261330 GTTTTTCTAGTTACGGTTTTCACGAAAATCTGCAT-TTTGATAAT 3261373 >seq145 Length=44152522 Score = 95.1 bits (104), Expect = 9e-15 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 15260 CCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCT 15319 ||||||||||||| |||||| ||| ||| | | |||| ||||||| |||| || || Sbjct 3407202 CCTTCTTTGTCACTGATTTTGGCCTTGACATTGTTGATGGAATCGCTAGTTTCAACCTCA 3407143 Query 15320 AAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 | || |||||||||||||| |||||||| || ||||| ||||| || Sbjct 3407142 AGAGTGATGGTTTTACCTGTGAGAGTTTTCACGAAAATCTGCATCTT 3407096 Score = 89.7 bits (98), Expect = 4e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 15260 CCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCT 15319 |||||||||||| |||||| ||| ||| | | |||| ||||||| |||| || || Sbjct 3425013 CCTTCTTTGTCATGGATTTTGGCCTTGACATTGTTGATGGAATCGCTACTTTCAACCTCA 3424954 Query 15320 AAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 | || |||||||||||||| |||||||| || ||||| ||||| || Sbjct 3424953 AGAGTGATGGTTTTACCTGTGAGAGTTTTCACGAAAATCTGCATCTT 3424907 >seq1 Length=34941034 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| || || | | ||| || || |||||||| || ||||| ||||||||||| | Sbjct 3649790 CCACCCCTTAAGCGGAGAACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCTGCT 3649731 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| ||||| || || || | || | | ||| ||||| ||| Sbjct 3649730 AGAGTCCGACCATCTTCCAATTGCTTTCCGGCAAAGATAAGCCTTTGCTGGTCTGGTGGG 3649671 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || || ||| |||||| |||| ||| | || || || || |||| || Sbjct 3649670 ATACCCTCCTTATCAGTAATTTTTGTCTTAACATTGTCAATAGTGTCTGAGCTTTCGACC 3649611 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||| || || || || || || ||||| || ||||| Sbjct 3649610 TCAAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATCTGCAT 3649564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362001551781486