Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_004735.1 Length=129908 Score E Sequences producing significant alignments: (Bits) Value seq10036 91.5 1e-13 seq25424 82.4 6e-11 seq20865 82.4 6e-11 seq3706 82.4 6e-11 >seq10036 Length=796 Score = 91.5 bits (100), Expect = 1e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 37706 GCGCCTGTAGCTCAACCGGAAAGAGCACCAGCCTTCTAAGCTGGTGGTTGTGGGTTCGAG 37765 ||||| |||||||||||||| |||||||| ||||||||||| |||||||| ||||||| Sbjct 208 GCGCCCGTAGCTCAACCGGATAGAGCACCGGCCTTCTAAGCCGGTGGTTGCAGGTTCGAT 149 Query 37766 TCCCACCGGGCGC 37778 ||| |||||||| Sbjct 148 TCCTGCCGGGCGC 136 >seq25424 Length=577 Score = 82.4 bits (90), Expect = 6e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 37706 GCGCCTGTAGCTCAACCGGAAAGAGCACCAGCCTTCTAAGCTGGTGGTTGTGGGTTCGAG 37765 |||||||||||||||||||| |||||| | ||||||||||| | ||||| |||||||| Sbjct 309 GCGCCTGTAGCTCAACCGGATAGAGCATCGGCCTTCTAAGCCGACGGTTGCAGGTTCGAG 250 Query 37766 TCCCACCGGGCGC 37778 ||| ||||||| Sbjct 249 TCCTGTCGGGCGC 237 >seq20865 Length=629 Score = 82.4 bits (90), Expect = 6e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 37704 AAGCGCCTGTAGCTCAACCGGAAAGAGCACCAGCCTTCTAAGCTGGTGGTTGTGGGTTCG 37763 |||||||||||||||||||||| |||||| | ||||||||||| | ||||| |||||| Sbjct 176 AAGCGCCTGTAGCTCAACCGGATAGAGCATCGGCCTTCTAAGCCGACGGTTGCAGGTTCG 117 Query 37764 AGTCCCACCGGGCGC 37778 | ||| ||||||| Sbjct 116 ATTCCTGTCGGGCGC 102 >seq3706 Length=935 Score = 82.4 bits (90), Expect = 6e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 37706 GCGCCTGTAGCTCAACCGGAAAGAGCACCAGCCTTCTAAGCTGGTGGTTGTGGGTTCGAG 37765 |||||||||||||||||||| |||||| | ||||||||||| | ||||| |||||||| Sbjct 186 GCGCCTGTAGCTCAACCGGATAGAGCATCGGCCTTCTAAGCCGACGGTTGCAGGTTCGAG 245 Query 37766 TCCCACCGGGCGC 37778 ||| ||||||| Sbjct 246 TCCTGTCGGGCGC 258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415376958396814