Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 8e-16 seq58 87.8 1e-12 >seq1 Length=34941034 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | ||| | | |||| |||||| || |||||||| || || |||||||| ||| Sbjct 3650246 CCTCCCCTCAAACGAAGAACCAGGTGCAAAGTGGACTCCTTCTGGATGTTGTAATCAGCC 3650187 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| || | ||||| ||||||||||| ||| | || |||||||| || || | || Sbjct 3650186 AATGTCCTGCCATCCTCAAGCTGTTTACCGGCAAAGATGAGTCTCTGTTGGTCAGCTGGA 3650127 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||| || ||||| | ||| ||| || || | | | | ||||| || | Sbjct 3650126 ATGCCTTCCTTGTCTGTAATCTTCGCCTTCACATTGTCAATGGTATCTGAGCTTTCAACT 3650067 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || ||||| || || || | ||| || ||||| || ||||| Sbjct 3650066 TCCAGTGTGATGGTCTTGCCAGTAAGAGTCTTCACAAAGATCTGCAT 3650020 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | ||| | | ||||| |||||| || |||||||| || ||||| ||||| ||| Sbjct 3650018 CCTCCCCTCAAACGAAGCACCAGGTGCAAAGTGGACTCCTTCTGGATATTATAATCGGCC 3649959 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATC 18927 | ||| || | ||||| ||||||||||| ||| | || || |||||||| || Sbjct 3649958 AATGTCCTGCCATCCTCAAGCTGTTTACCGGCAAAGATGAGCCTCTGCTGGTC 3649906 >seq58 Length=2649046 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | ||| | | ||||| ||| | |||||||||||||| ||||||||||||| Sbjct 1147611 TTCCTCCCCTCAAACGAAGCACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAATCCG 1147552 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | | ||||| ||||| ||||| ||| |||| | |||||||| || || Sbjct 1147551 CAAGAGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGG 1147492 Query 18933 GCACGCCCTCTTTGTC 18948 | | ||||| || || Sbjct 1147491 GAATACCCTCCTTATC 1147476 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| || | ||||||||||| || || ||||| || |||| || | | ||||| Sbjct 1147364 CACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTCCTTCCATCCTC 1147305 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||| || | || | ||||||||||| ||| | || || || || Sbjct 1147304 AAGCTGCTTACCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTATCCTG 1147245 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||| || || | | ||| ||||||| | |||| || | ||| || || || Sbjct 1147244 GATTTTCGCCTTGACATTGTCGATAGTATCGGAACTCTCCACCTCCAAGGTGATAGTCTT 1147185 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || || ||||||||||| ||||| Sbjct 1147184 GCCAGTCAATGTCTTGACAAAAATCTGCAT 1147155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414369452818924