Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq57 87.8 1e-12 >seq57 Length=33024243 Score = 87.8 bits (96), Expect = 1e-12 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAAT-TGAGTTGGTCATCCAATTGCTTTCC 33231 ||||||||||| || || |||||||||| ||| | || | || || | ||| ||||| Sbjct 18658262 GTCGACTCTTTCTGGATGTTGTAATCAG-CAAGTGTGCGACCATCTTCAAGTTGTTTTCC 18658320 Query 33232 ACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTT 33291 || || | |||||| ||||| | || ||||||||||| || ||| ||| Sbjct 18658321 GGCGAAAATCAGACGTTGTTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATCTTTGCTTT 18658380 Query 33292 TACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGT 33351 || | | || |||||| || || || || || ||||| ||||| ||||| || || Sbjct 18658381 CACATTGTCGATGGTGTCGGAGGATTCGACTTCTAGGGTTATGGTTTTACCCGTTAGGGT 18658440 Query 33352 TTTTACGAAAATTTGCATGTTT 33373 ||| ||||| || ||||| ||| Sbjct 18658441 TTTCACGAAGATCTGCATCTTT 18658462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318621240184908