Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq127 140 3e-28 seq101 87.8 2e-12 >seq127 Length=60962716 Score = 140 bits (154), Expect = 3e-28 Identities = 436/659 (66%), Gaps = 27/659 (4%) Strand=Plus/Plus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 ||||||||||| || ||||| || | |||||| || ||||| || || || || ||| Sbjct 5746630 GACATAACAGAAGCCTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 5746689 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTT---A 12961 | | ||||| ||||| |||| || ||||| ||| ||| | || | Sbjct 5746690 TGAAGAGAAATCAACTCCATCCAATCAAACGGATT---CGACACGCCGTAAATCTTCCCA 5746746 Query 12962 CACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCA 13021 || || | | |||||||| |||||||||||||| || ||||| |||| || ||| Sbjct 5746747 CAACCAAGCGCAGCCAACAATCTATCAGCAACAAACTCAATATACTGACTCATCAACTCA 5746806 Query 13022 CAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCA 13081 |||||||| |||| || ||||||| || || | ||| | | || || ||| Sbjct 5746807 CAGTTCATCCCTACCAAAGCAACAGGCAATGCATCACACACAAATTCCCTCTCAATTTCA 5746866 Query 13082 ACTGCTTCGATAACTATGTCTCTTATTACGTTCTC-TAATGGAGGAT----TTGATAGAT 13136 ||||| || | ||||| | || || ||||| | || | | || | || Sbjct 5746867 ACTGCATCTTTCACTATCCC-CTGC--ACTTTCTCCTCATTCGGCTTCTTCTTCAACAAT 5746923 Query 13137 GCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGT 13196 | || | || | ||| ||||||||||| || | |||||| |||| | || | || | Sbjct 5746924 CCATACA-ATAA-ACAAGCAAAATCACAATGAAGTCCTTCGTCTCGAGAGATCAATTCAT 5746981 Query 13197 TTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATAT--AGCAGCAAA 13254 | ||||| |||| ||||||||| ||||| || || |||| |||||| || ||||| ||| Sbjct 5746982 TCGAAAACGTTAAACCCGGCATTAGCCCACGCTTCTTAAGCCAAAAAATGGAGCAG-AAA 5747040 Query 13255 CGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGT 13314 | || || || ||||| ||||||| |||||||| || | ||| || || | | Sbjct 5747041 C-TTCCTGAGAAGAATATCCCTTCAATACAAGCAAACGCAATTATCCTCTCTGCAAATG- 5747098 Query 13315 ACTATTTTTACTC-TCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCA 13373 ||| || | || |||||| | ||||| | || || | ||| || ||| || Sbjct 5747099 ---ATTCAGACCCATCAATCCACCTCAGTGCCCAATCAGCCTTCTTTTTCACACAGGGCA 5747155 Query 13374 TATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTA 13433 |||| ||||| ||| | | | ||||| || ||| ||||| |||| Sbjct 5747156 CGGTTTCGATTGCTCGAAAGAGGTGAGATTTTTGGGATGAATCCTTAATGTAAGTTTCTA 5747215 Query 13434 TCAATAAGCTA-TACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAA 13491 || || | |||||||| |||||||| ||||| || || ||||| ||||| ||||| Sbjct 5747216 -AAAGGAGTGAGTACATTTCAGAATGAATGTTTTCAATGGCGATTTGAAAACCGTAAAA 5747273 >seq101 Length=788685 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/105 (79%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAG 13209 ||| ||||| |||||||| | |||||||| || || |||||||||||| |||| | Sbjct 138189 ACAGGCAAAGTCACAGTGGAGGCCTTCATCCCTCGAGATAAGCTCGTTTGAATATGTCAA 138248 Query 13210 ACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAA 13254 ||| ||||| | ||||| ||||||| ||||||||| ||| |||| Sbjct 138249 ACCAGGCATCAACCCTCTCTTTTTAAGCCAAAATATGGCA-CAAA 138292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430771003940892