Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq58 104 2e-17 seq1 87.8 2e-12 >seq58 Length=2649046 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || | ||| | | ||| |||||||| || |||||| || |||||||| ||||| Sbjct 1147382 ACCACCCCTCAAACGAAGCACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGC 1147323 Query 48559 CAATTGTCGCTCG-TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 ||| ||| || ||||| ||||||||||| || | || || | ||||||||| | Sbjct 1147322 CAAA-GTCCTTCCATCCTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGATCTGGGG 1147264 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | || |||||| ||| |||||| ||||| | | || ||||||| | |||| Sbjct 1147263 GAATACCTTCCTTATCCTGGATTTTCGCCTTGACATTGTCGATAGTATCGGAACTCTCCA 1147204 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || || || || || || | || || |||||||||||||| Sbjct 1147203 CCTCCAAGGTGATAGTCTTGCCAGTCAATGTCTTGACAAAAATCTGCAT 1147155 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| | ||| | | || |||||||| ||| ||||| || || ||||||||||| Sbjct 1147154 ACCTCCCCTCAAACGGAGAACCAAATGAAGGGTGGATTCCTTCTGGATATTGTAATCAGC 1147095 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | || || ||||||||||| | | || || | |||||| || || Sbjct 1147094 CAAAGTACGGCCATCTTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGAGG 1147035 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || |||||||||| ||| || ||| | | | || ||||| | || | | Sbjct 1147034 AATACCTTCCTTGTCCTGAATCTTAGCCTTAACATTGTCGATCGTATCCG-AGCTTTCAA 1146976 Query 48679 C-TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || | || || || || ||||||||||| |||||||| || ||||| Sbjct 1146975 CTTCCAAAGTAATCGTCTTCCCGGTGAGAGTCTTCACAAAGATTTGCAT 1146927 >seq1 Length=34941034 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTC--GCTCGTCCTCCAGCTGCTTACCGCCG 48592 |||||| || ||||||||||||||||| |||| || | ||||| ||||| |||||| | Sbjct 3650211 CTCCTTCTGGATGTTGTAATCAGCCAA-TGTCCTGC-CATCCTCAAGCTGTTTACCGGCA 3650154 Query 48593 TAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATA 48652 | || | | ||| || || | || | | ||||||||| |||| ||| ||| | | Sbjct 3650153 AAGATGAGTCTCTGTTGGTCAGCTGGAATGCCTTCCTTGTCTGTAATCTTCGCCTTCACA 3650094 Query 48653 GACGCTATGGTATCGGTAGACTCCGTC-TCGACTGTTATGGTTTTACCGGTGAGAGTTTT 48711 | |||||||| | || | | | || | ||| ||||| || || || ||||| || Sbjct 3650093 TTGTCAATGGTATCTG-AGCTTTCAACTTCCAGTGTGATGGTCTTGCCAGTAAGAGTCTT 3650035 Query 48712 CACAAAAATCTGCAT 48726 |||||| |||||||| Sbjct 3650034 CACAAAGATCTGCAT 3650020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421044577076246