Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq47 116 2e-21 seq43 111 8e-20 seq187 107 1e-18 seq170 107 1e-18 seq127 107 1e-18 seq96 107 1e-18 seq145 104 1e-17 seq22 104 1e-17 seq246 102 4e-17 >seq47 Length=707023 Score = 116 bits (128), Expect = 2e-21 Identities = 82/94 (87%), Gaps = 4/94 (4%) Strand=Plus/Minus Query 11441 AATAAAAAATC----AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || |||||||| || |||||||||| | | |||||||| ||||||||||||||||| Sbjct 410649 AAAAAAAAATCTAGCAATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 410590 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||| ||||||||||||||||||||| Sbjct 410589 GCACGACGCTCTAACCAACTGAGCTAATGGGCCG 410556 >seq43 Length=26577699 Score = 111 bits (122), Expect = 8e-20 Identities = 87/104 (84%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||| | | || || |||||| | |||||||| ||| | | |||||||| ||||||||| Sbjct 15977226 AAAAACAAAAGTATTAAAAATT--AATTGGCCTATGCAGGTCTCGAACCTGCGACCTTCG 15977283 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||||||||||||||||||| ||||||||||||||| |||| || Sbjct 15977284 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCCTTC 15977327 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 8827300 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 8827359 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 8827360 TGAGCTAATGGGCC 8827373 >seq187 Length=45274173 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | || |||||||| ||||||| ||||||||||||| ||||||| || Sbjct 38606113 AAAATGGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTAGCACCACGCTCTAAC 38606172 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 38606173 CAACTGAGCTAATGGGCC 38606190 Score = 107 bits (118), Expect = 1e-18 Identities = 74/83 (89%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 11447 AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCT 11506 ||| ||||| |||||||| | || |||||||| ||||||| ||||||||||||| ||||| Sbjct 39017800 AAAACAAAT-GGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTAGCACCACGCT 39017742 Query 11507 CTRACCAACTGAGCTAATGGGCC 11529 || |||||||||||||||||||| Sbjct 39017741 CTAACCAACTGAGCTAATGGGCC 39017719 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||| ||| | || |||||||| ||||||| ||||||||||||| ||||||| ||| Sbjct 38606264 AAATGGCCTATGCAGGGCTCGAACCTGCGACCTTGGCGTTATTAGCACCACGCTCTAACC 38606323 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 38606324 AACTGAGCTAATAGGCC 38606340 >seq170 Length=38796167 Score = 107 bits (118), Expect = 1e-18 Identities = 89/107 (83%), Gaps = 3/107 (3%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAA--AAAATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCT 11485 ||| || ||||| | || ||||| | |||||||||||| | | |||||||| |||||| Sbjct 8853719 AAAAATGGAATTTAAAACCAAAATTATAATTGGCCCATGCAGGTCTCGAACCTGCGACCT 8853660 Query 11486 TCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 ||||||||||||||| ||||||| |||| |||||||||| |||| || Sbjct 8853659 TCGCGTTATTAGCACAACGCTCTAACCAGCTGAGCTAATAGGCCATC 8853613 >seq127 Length=60962716 Score = 107 bits (118), Expect = 1e-18 Identities = 85/102 (83%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 11428 GAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 || ||| | ||||||| ||| ||| ||||||||| | | |||||||| |||||||| Sbjct 3938379 GAGATAAAAAATTAATGTTAAA--AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTC 3938322 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||| |||| |||||||||| |||| Sbjct 3938321 GCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 3938280 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 11561420 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 11561361 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 11561360 TGAGCTAATAGGCC 11561347 >seq96 Length=52461754 Score = 107 bits (118), Expect = 1e-18 Identities = 76/87 (87%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 42170587 TAAAAAA--AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 42170644 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||| |||||||||| |||| Sbjct 42170645 CGCTCTAACCAGCTGAGCTAATAGGCC 42170671 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 40231789 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 40231730 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 40231729 CAGCTGAGCTAATAGGCC 40231712 >seq145 Length=44152522 Score = 104 bits (114), Expect = 1e-17 Identities = 76/89 (85%), Gaps = 4/89 (4%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| |||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 352672 AACAAAAAAT----TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 352727 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 352728 GACGCTCTAACCAGCTGAGCTAATAGGCC 352756 >seq22 Length=40393389 Score = 104 bits (114), Expect = 1e-17 Identities = 74/85 (87%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||||||||| ||| | || |||||||| ||||||| ||||||||||||| ||| Sbjct 61630 AAAAA--AAATTGGCCTATGCAGGGCTCGAACCTGCGACCTTGGCGTTATTAGCACCACG 61687 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 61688 CTCTAACCAACTGAGCTAATAGGCC 61712 >seq246 Length=439858 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| ||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 376560 AAAATGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 376501 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 376500 CAACTGAGCTAATAGGCC 376483 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261362939056696