Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq113 147 3e-31 seq43 131 3e-26 seq145 129 9e-26 seq1 123 4e-24 >seq113 Length=225502 Score = 147 bits (162), Expect = 3e-31 Identities = 177/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| || ||||| ||||| ||||| ||| | ||||| | | ||||||| Sbjct 157427 GAGACAACATCCAGGGTATCACTAAGCCTGCTATTCGTAGATTGGCTAGAAGAGGTGGAG 157368 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||| | | ||| || | |||||||| | ||||| ||||||||||||||| | Sbjct 157367 TGAAGAGAATTAGTGGTCTGATTTATGAAGAAACTCGTGGTGTTTTGAAGATCTTTTTGG 157308 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||||| | ||||||| || || || ||||| ||| ||||| ||||| || Sbjct 157307 AGAATGTTATTCGTGATGCTGTCACTTACACTGAGCATGCTCGCCGTAAAACTGTAACTG 157248 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| |||||||||| | || | ||||| |||| |||| ||||| || ||| Sbjct 157247 CCATGGATGTCGTCTATGCTCTTAAGAGGCAAGGTCGTACTCTTTACGGTTTCGGTGGTT 157188 Query 16698 A 16698 | Sbjct 157187 A 157187 Score = 147 bits (162), Expect = 3e-31 Identities = 177/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||| || || ||||| ||||| ||||| |||||| ||||| | | ||||||| Sbjct 174262 GAGACAACATTCAGGGTATCACTAAGCCTGCTATTCGTCGTTTGGCTAGAAGAGGTGGAG 174321 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||| | | ||| | | |||||||| | ||||| ||||||||||||||| | Sbjct 174322 TGAAGAGGATTAGTGGTCTAATTTATGAAGAAACTCGTGGTGTTTTGAAGATCTTTTTGG 174381 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | ||||| | ||||||| || || || ||||| ||| ||||| ||||| || Sbjct 174382 AAAATGTTATTCGTGATGCTGTCACTTACACTGAGCATGCTCGCCGTAAAACTGTAACTG 174441 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| |||||||||| | || | ||||| |||| |||||||||| || ||| Sbjct 174442 CCATGGATGTCGTCTATGCTCTTAAGAGGCAAGGTCGTACACTTTATGGTTTCGGTGGTT 174501 Query 16698 A 16698 | Sbjct 174502 A 174502 Score = 138 bits (152), Expect = 2e-28 Identities = 175/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| || ||||| ||||| ||||| ||| | ||||| | | ||||||| Sbjct 168083 GAGACAACATCCAGGGTATCACTAAGCCTGCTATTCGTAGGTTGGCTAGAAGAGGTGGAG 168024 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||| | | ||| ||| | ||||| || | ||||| ||||||||||||||| | Sbjct 168023 TGAAGAGGATTAGTGGTTTGATTTATGAGGAAACTCGTGGTGTTTTGAAGATCTTTTTGG 167964 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | ||||| | ||||||| || || || ||||| ||| ||||| ||||| || Sbjct 167963 AAAATGTTATTCGTGATGCTGTCACTTACACTGAGCATGCTCGCCGTAAAACTGTTACTG 167904 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | |||||||| | || | ||||| |||| |||| ||||| || ||| Sbjct 167903 CCATGGATGTTGTCTATGCTCTTAAGAGGCAAGGTCGTACTCTTTACGGTTTCGGTGGTT 167844 Query 16698 A 16698 | Sbjct 167843 A 167843 Score = 96.9 bits (106), Expect = 5e-16 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 16483 GCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTA 16542 ||| ||||| ||| | ||||| | | |||||||| ||| | | ||| | | || Sbjct 137514 GCCTGCTATTCGTAGGTTGGCTAGAAGAGGTGGAGTGAAGAGGATAAGTGGTCTACTTTA 137455 Query 16543 TGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCA 16602 ||| || | ||||| ||||||||||||||| | | | |||| ||||||| || Sbjct 137454 TGAGGAAACTCGTGGTGTTTTGAAGATCTTTTTGGAAAATATTATTTGTGATGCTGTCAC 137395 Query 16603 CTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662 ||||| ||||||||| ||||| ||||| || ||||||| | |||||||| | || Sbjct 137394 TTATACTGAGCACGCTCGCCGTAAAACTGTAACTGTCATGGATGTTGTCTATGCTCTTAA 137335 Query 16663 ACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 | ||||| |||| |||| ||||| || |||| Sbjct 137334 GAGGCAAGGTCGTACTCTTTACGGTTTCGGTGGTTA 137299 >seq43 Length=26577699 Score = 131 bits (144), Expect = 3e-26 Identities = 174/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| || || ||||| || |||||||| ||||| |||||||| || | | ||||| | Sbjct 20439629 GAGACAATATTCAAGGTATTACCAAGCCTGCTATTCGTCGTCTCGCAAGAAGAGGTGGTG 20439688 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||| | || ||| || | |||||||| | ||| | ||||||||||||||| | Sbjct 20439689 TTAAGAGAATCAGTGGGCTGATTTATGAAGAAACTCGCGGTGTTTTGAAGATCTTTTTGG 20439748 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| |||||| |||||| | || || ||||| ||| |||||||| || || Sbjct 20439749 AGAATGTTATCAGAGATGCTGTTACTTACACTGAGCATGCTCGTCGTAAGACGGTTACTG 20439808 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | |||||||| | || | ||||| |||| | ||||||||||| ||| Sbjct 20439809 CTATGGATGTTGTCTATGCTCTTAAGAGACAAGGTCGTACTCTCTATGGTTTTGGTGGTT 20439868 Query 16698 AA 16699 || Sbjct 20439869 AA 20439870 >seq145 Length=44152522 Score = 129 bits (142), Expect = 9e-26 Identities = 176/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| ||||| || || || || || || |||||||| || | | ||||| | Sbjct 41833438 GAGATAACATTCAAGGTATTACAAAACCTGCAATTCGTCGTCTTGCAAGAAGAGGTGGTG 41833379 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| | ||| ||| |||||||||||| |||| || | ||||||||| | Sbjct 41833378 TGAAGCGTATAAGTGGTTTGATCTATGAAGAGACACGTGGCGTGCTTAAGATCTTCTTGG 41833319 Query 16578 AGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| || || | ||||||| || || || || ||||| || | | ||||| || ||| Sbjct 41833318 AGAATGTGATTCGTGATGCTGTTACA-TACACTGAGCATGCGAGGAGGAAGACGGTTACC 41833260 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 |||||||| | || ||||| | ||| | ||||| | | | |||||||||||| || Sbjct 41833259 GCCATGGATGTTGTTTATGCTCTTAAAAGGCAAGGAAGAACTTTGTATGGTTTTGGAGGT 41833200 Query 16697 TAA 16699 ||| Sbjct 41833199 TAA 41833197 >seq1 Length=34941034 Score = 123 bits (136), Expect = 4e-24 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || || || || || ||||| || || || || ||||| |||| | | |||||||| Sbjct 19786349 GACAATATTCAGGGTATCACTAAACCCGCCATTCGTCGATTGGCCAGAAGAGGTGGAGTT 19786408 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | || ||| | | ||||| || | ||||| |||||||||||||||| | | Sbjct 19786409 AAGAGAATCAGTGGTCTTATTTATGAGGAAACTCGTGGTGTTTTGAAGATCTTCTTGGAA 19786468 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||||| | ||||||| | ||||| || |||||| ||||| ||||||||| || Sbjct 19786469 AATGTTATTCGTGATGCTGTTACTTATACTGAACACGCTCGTCGTAAAACTGTCACCGCC 19786528 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | |||||||| | || | ||||| || | |||| ||||| || ||||| Sbjct 19786529 ATGGATGTTGTCTATGCTCTTAAGAGGCAAGGTCGCACTCTTTACGGTTTCGGTGGTTAA 19786588 Query 16700 T 16700 | Sbjct 19786589 T 19786589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79038402800478