Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq127 242 5e-59 >seq127 Length=60962716 Score = 242 bits (268), Expect = 5e-59 Identities = 601/905 (66%), Gaps = 9/905 (1%) Strand=Plus/Plus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 || || || || || || | || || || |||||||| || |||| | || || Sbjct 5746645 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAAATCAAC 5746704 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 ||||| ||||||||||||| | || ||||| || | | || | ||| | | Sbjct 5746705 TCCATCCAATCAAACGGATTCGACACGCCGTAAATCTTCCCACAACCAAGCGCAGCCAAC 5746764 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 |||||||| || || || || ||||| |||||| ||||| ||||| |||| | Sbjct 5746765 AATCTATCAGCAACAAACTCAATATACTGACTCATCAACTCACAGTTCATCCCTACCAAA 5746824 Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252 ||| || | || || | |||||| ||||| || |||||| | | || Sbjct 5746825 GCAACAGGCAATGCATCACACACAAATTCCCTCTCAATTTCAACTGCATCTTTCACTATC 5746884 Query 33253 GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAA 33312 || | || ||| |||| | | || | | ||| ||||| || ||| Sbjct 5746885 CCCTGCACTTTCTCCTCATTCGGCTTCTTCTTCAACAATCCATACAATAAACAAGCAAAA 5746944 Query 33313 TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATT 33372 || || || || || ||||||| | || | ||| || |||||||| | || |||||| Sbjct 5746945 TCACAATGAAGTCCTTCGTCTCGAGAGATCAATTCATTCGAAAACGTTAAACCCGGCATT 5747004 Query 33373 AGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCT 33432 || |||||||| ||||||||||| ||||| ||| ||| || ||||| || ||||| Sbjct 5747005 AGCCCACGCTTCTTAAGCCAAAAAATGGAGCAGAAACTTCCTGAGAAGAATATCCCTTCA 5747064 Query 33433 ACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGA 33492 | |||||| ||||| | |||||| || | | ||| |||||| | | Sbjct 5747065 ATACAAGCAAACGCAATTATCCTCTCTGCAAATGATTCAGACCCATCAATCCACCTCAGT 5747124 Query 33493 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT-AG-t 33550 |||||||| ||||||||||| ||||| |||| ||||| || || |||||| | || | Sbjct 5747125 GCCCAATCAGCCTTCTTTTTCACACAGGGCACGGTTTCGATTGCTCGAAAGAGGTGAGAT 5747184 Query 33551 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT--ATACATTTCCGAATG 33608 |||| || | ||| |||| ||||| || | ||| || | |||||||| ||||| Sbjct 5747185 TTTTGGGATGA--ATCCTTAATGTAAGTTTC--TAAAAGGAGTGAGTACATTTCAGAATG 5747240 Query 33609 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 33668 ||||||||||||||| || ||||| ||||| || | || || | | || || || Sbjct 5747241 AATGTTTTCAATGGCGATTTGAAAACCGTAAAATGCGCGCGCTTCAGCGACTTGCACCTC 5747300 Query 33669 TGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 33728 | | ||| || | || | |||||| ||| ||||| || || || || || || Sbjct 5747301 TTTCATAAACCGACCTGCGAGATTTTCCAGCACGATTCCATCTGATGCGGCGAAGAAGGC 5747360 Query 33729 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 33788 | || ||| | || |||| ||| ||||| | ||||| | | ||| | | | ||| Sbjct 5747361 GAGAACGTGTGTAATGAAATGTTTCTCGTCGGAAGTTAGGGTTTCCCAGTGACCTAAATC 5747420 Query 33789 TTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTT 33848 |||| ||| |||||||| | |||||||| ||||| || || ||||| ||||| | Sbjct 5747421 GGATGATAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGCTTTTTTGTACATTTC 5747480 Query 33849 CCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAGGA- 33907 |||||| | |||| |||||||| ||| ||| ||| ||| ||||| || || | Sbjct 5747481 CCAGATTTGTGGGTATTCAATTGGGAACATACAGAATTTATCTGGGTTTGGGGCTAGAAG 5747540 Query 33908 TGGGT 33912 ||||| Sbjct 5747541 TGGGT 5747545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622633810837360