Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq146 123 2e-23 seq57 114 1e-20 seq58 96.9 3e-15 seq180 82.4 7e-11 >seq146 Length=1334862 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 || |||||| | || || ||||| ||||||||||| | || ||| | ||| | ||||| Sbjct 1119865 CAGAATGCAGATTTTCGTGAAAACCCTAACTGGAAAAACCATAACCCTAGAAGTGGAATC 1119924 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 ||| || ||||| | || ||| |||||| ||||||||||| || || || || Sbjct 1119925 TTCCGATACAATCGACAACGTGAAAACAAAGATCCAAGACAAAGAAGGAATTCCACCAGA 1119984 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 ||||||| | || |||| || ||| |||||| | ||||||| |||| || || || Sbjct 1119985 TCAACAACGCCTGATTTTCGCCGGAAAACAATTGGAAGATGGAAGAACTCTCGCAGATTA 1120044 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||| |||||||| || | || |||| || || ||| | || || Sbjct 1120045 CAACATTCAGAAAGAATCAACGCTTCACTTGGTGCTAAGGCTTCGTGGTGG 1120095 >seq57 Length=33024243 Score = 114 bits (126), Expect = 1e-20 Identities = 171/239 (72%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 26759 GTCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATT 26818 |||| | || ||||| | || || ||||| |||| || ||| | || ||| | ||| | Sbjct 18658468 GTCAGAAAAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGT 18658409 Query 26819 AGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACC 26878 ||||| |||||||||||| | || ||| |||||| ||||||||||| || || Sbjct 18658408 CGAATCCTCCGACACCATCGACAATGTGAAAGCAAAGATCCAAGACAAAGAAGGCATTCC 18658349 Query 26879 TCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG-AAACGTCA 26937 || || |||||| | || |||| || ||| |||||||| ||||||| | | | || | Sbjct 18658348 ACCAGACCAACAACGTCTGATTTTCGCCGGAAAACAACTTGAAGATGGTCGCACACTT-- 18658291 Query 26938 GC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || ||||| || ||||| || ||| | || || || || | || ||||| || Sbjct 18658290 GCTGATTACAACATCCAGAAAGAGTCGACTCTTCACCTTGTTCTTCGTCTGAGAGGTGG 18658232 >seq58 Length=2649046 Score = 96.9 bits (106), Expect = 3e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||||||| | || || |||||| ||||| ||||| || ||||| ||||| Sbjct 1146530 CGACACCATCGACAACGTAAAGGCAAAGATCCAAGACAAGGAAGGAATTCCTCCAGATCA 1146589 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 |||| | | || | | ||| |||||||| ||||| | ||| || |||||| || Sbjct 1146590 ACAACGTTTAATCTTTGCCGGAAAACAACTTGAAGACGGCCGAACTCTCGCCGACTACAA 1146649 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| ||||| || || ||| ||||||| ||||| | | |||||||| Sbjct 1146650 CATCCAAAAGGAGTCAACTCTCCATCTTGTCCTCCGTTTAAGAGGAGG 1146697 >seq180 Length=370853 Score = 82.4 bits (90), Expect = 7e-11 Identities = 121/168 (72%), Gaps = 4/168 (2%) Strand=Plus/Plus Query 26830 ACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAAC 26889 |||||||||| | || ||| |||||| ||||||||||| || || || | |||| Sbjct 23580 ACACCATCGACAATGTGAAAGCAAAGATCCAAGACAAAGAAGGCATTCCACCACACCAAC 23639 Query 26890 AAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG-AAACGTCAGC-GACTATAA 26947 || | || |||| || ||| |||||||| ||||||| | | | || | || || || || Sbjct 23640 AACGTCTGATTTTCGCCGGAAAACAACTTGAAGATGGTCGCACACTT--GCTGATTACAA 23697 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| || ||||| || ||| | || || || || | || ||||| || Sbjct 23698 CATCCAGAAAGAGTCGACTCTTCACCTTGTTCTCCGTCTCAGAGGTGG 23745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478421596913120