Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq146 125 6e-24 seq57 109 5e-19 seq1 102 7e-17 seq157 89.7 4e-13 seq257 82.4 7e-11 seq145 82.4 7e-11 >seq146 Length=1334862 Score = 125 bits (138), Expect = 6e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 || |||||| | || || ||||| ||||||||||| | || ||| | ||||| || | Sbjct 1119865 CAGAATGCAGATTTTCGTGAAAACCCTAACTGGAAAAACCATAACCCTAGAAGTGGAATC 1119924 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 ||| || ||||| | || ||| |||||| ||||||||||| || || || || Sbjct 1119925 TTCCGATACAATCGACAACGTGAAAACAAAGATCCAAGACAAAGAAGGAATTCCACCAGA 1119984 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 |||||| | ||||||| || ||| || ||| | ||||||| |||| || ||||| Sbjct 1119985 TCAACAACGCCTGATTTTCGCCGGAAAACAATTGGAAGATGGAAGAACTCTCGCAGATTA 1120044 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 |||||||| |||||||| || |||| || ||| |||| Sbjct 1120045 CAACATTCAGAAAGAATCAACGCTTCACTTGGTGCTAAG 1120083 >seq57 Length=33024243 Score = 109 bits (120), Expect = 5e-19 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || ||| | || ||| | |||||||| || Sbjct 18658461 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATCC 18658402 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | || ||| |||||| |||||||||||||| || || || Sbjct 18658401 TCCGACACCATCGACAATGTGAAAGCAAAGATCCAAGACAAAGAAGGCATTCCACCAGAC 18658342 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAACGTCAGC-GATT 24165 ||||| | ||||||| || ||| || ||||| |||||| | | | || | || |||| Sbjct 18658341 CAACAACGTCTGATTTTCGCCGGAAAACAACTTGAAGATGGTCGCACACTT--GCTGATT 18658284 Query 24166 ATAACATTCAAAAAGAATCTACAATTCA 24193 | ||||| || ||||| || || |||| Sbjct 18658283 ACAACATCCAGAAAGAGTCGACTCTTCA 18658256 >seq1 Length=34941034 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | || ||||| | ||||| ||||||||||| | Sbjct 3649336 ATGCAAATCTTTGTGAAAACTCTCACCGGAAAGACTATTACTCTCGAAGTCGAGAGCTCA 3649395 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| ||||| ||||| || || || || || ||||| Sbjct 3649396 GACACAATCGATAATGTCAAGACCAAGATCCAGGACAAGGAGGGGATTCCACCAGATCAG 3649455 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| ||||| | | || || ||||| || |||| || |||| ||| || || || Sbjct 3649456 CAGAGGCTGATCTTTGCTGGGAAACAACTGGAGGATGGAAG-GACGTTAGCAGACTACAA 3649514 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||| ||||| ||||| || ||||||| || Sbjct 3649515 CATCCAAAAGGAATCAACTCTTCATTTGGT 3649544 >seq157 Length=426068 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | |||||||| |||| || | || || ||| | Sbjct 398741 ATGCAGATTTTCGTGAAGACTCTCACTGGAAAGACGATCACTCTGGAGGTGGAGAGCTCG 398800 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || ||| |||||| ||||| ||||| || ||||| ||||| Sbjct 398801 GATACTATTGATAATGTGAAAACAAAGATACAGGACAAGGAAGGGATCCCTCCAGATCAG 398860 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||||| | ||| ||||| | ||||||| | | | || ||||||||| Sbjct 398861 CAGAGGCTGATTTTTGCCGGTAAGCAGTTGGAAGATGGTCGTACCCTCGCTGATTATAAC 398920 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 ||||| || ||||| || ||||| Sbjct 398921 ATTCAGAAGGAATCAACCCTTCAT 398944 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || ||||| || |||| || |||| || ||| Sbjct 397829 ATGCAAATCTTTGTTAAGACCTTGACTGGTAAGACGATCACTCTCGAGGTGGAGAGTTCT 397888 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || || ||||||| ||||| || ||||| ||||| || || Sbjct 397889 GATACAATTGACAATGTTAAGGCAAAGATTCAAGACAAGGAGGGCATTCCTCCTGACCAG 397948 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | ||||| | | ||| |||||||||||||||| | ||| | | ||||| || Sbjct 397949 CAACGTCTGATCTTTGCCGGTAAGCAACTCGAAGATGGCCGAACCCTTGCTGATTACAAT 398008 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 ||||| || || || || ||||| Sbjct 398009 ATTCAGAAGGAGTCAACCCTTCAT 398032 >seq257 Length=328955 Score = 82.4 bits (90), Expect = 7e-11 Identities = 128/182 (70%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 24013 TAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAAC 24072 |||||| || | |||| || | || || ||| | || || || || | || ||| Sbjct 268622 TAACTGAAAGA-CGATCACTCTGGAGGTTGAGAGCTCGGATACTATTGATAATGTTAAAA 268680 Query 24073 AAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCA 24132 |||||| ||||| ||||| || ||||| ||||| ||||| ||||||| | ||| | Sbjct 268681 CAAAGATACAGGACAAGGAAGGGATCCCTCCAGATCAGCAGAGGCTGATTTTTGCCGGTA 268740 Query 24133 AGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTC 24192 |||| | ||||||| | | | | ||||||||||||||| || ||||| || ||| Sbjct 268741 AGCAGTTGGAAGATGGTCGTACCCTTGCCGATTATAACATTCAGAAGGAATCAACCCTTC 268800 Query 24193 AT 24194 || Sbjct 268801 AT 268802 >seq145 Length=44152522 Score = 82.4 bits (90), Expect = 7e-11 Identities = 128/182 (70%), Gaps = 1/182 (1%) Strand=Plus/Minus Query 24013 TAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAAC 24072 |||||| || | |||| || | || || ||| | || || || || | || ||| Sbjct 18651346 TAACTGAAAGA-CGATCACTCTGGAGGTTGAGAGCTCGGATACTATTGATAATGTTAAAA 18651288 Query 24073 AAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCA 24132 |||||| ||||| ||||| || ||||| ||||| ||||| ||||||| | ||| | Sbjct 18651287 CAAAGATACAGGACAAGGAAGGGATCCCTCCAGATCAGCAGAGGCTGATTTTTGCCGGTA 18651228 Query 24133 AGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTC 24192 |||| | ||||||| | | | | ||||||||||||||| || ||||| || ||| Sbjct 18651227 AGCAGTTGGAAGATGGTCGTACCCTTGCCGATTATAACATTCAGAAGGAATCAACCCTTC 18651168 Query 24193 AT 24194 || Sbjct 18651167 AT 18651166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429725117198130